Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0024607

Physical Location & Seq

Genomic Coordinates Forward (+)

10403338 .. 10403796

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGTGGAACCTGACCCCGTCCATCAACAGAAGCCACAACAACGTGCACCAATTTTCAATAGCGAAGACACAAGGGTGCGAAGCCATATTCCCCAGAAGGAATCAAGACTCGGGAGTGGAAGTGGTAACAGTCGGGATTACTATCAGCAGGATGATTCTCCACCGCCTGCTCATCCAGGGGATCGATGATCATATCTGCAAGAAGAAGAGAAAAGACAGGGAGAAGTCCGTGGTGAAGACTAGGACTGGATCTGCTGGCCCTGTTTCACCCCCAAGCGTGGGTCGCGGTATTAGAAGTCCAGGTCCAAATTCAGTTGCAAAACAAACTCCCCATCCGCAAGGGTGGGCAAACCAGTCTGGTCAGCCGACGAACAAGGGTGGAGGGTCGGTTGGTTGGGCAAATCCCGTGAAGAAGCTAAGGACAGATTCTGGAAAGAGACGCCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

11.38

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024607)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g09540
rosa_multiflora	Rmu_co8386449.1_g000001 Rmu_sc0012426.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	166, 288, 338
AclWI	GGATC	2 cut(s)	191, 259
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	280, 281
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	177, 301
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	433
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	191, 259
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	259
ApaLI	GTGCAC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	260, 305
AsuHPI	GGTGA	2 cut(s)	247, 261
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	51
BbsI	GAAGAC	2 cut(s)	74, 245
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	2 cut(s)	32, 342
BciT130I	CCWGG	2 cut(s)	179, 303
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	179, 303
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	260, 305
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	179, 303
BpiI	GAAGAC	2 cut(s)	74, 245
Bpu10I	CCTNAGC	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	178, 231
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 281
Bse1I	ACTGG	2 cut(s)	253, 355
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	179, 303
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	178, 231
BseGI	GGATG	3 cut(s)	159, 174, 334
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	280, 281
BseNI	ACTGG	2 cut(s)	253, 355
BseSI	GKGCMC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	280, 281
BsmAI	GTCTC	1 cut(s)	433
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	183, 190, 251
BspACI	CCGC	3 cut(s)	166, 288, 338
BspANI	GGCC	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	191, 259
BsrI	ACTGG	2 cut(s)	253, 355
BssECI	CCNNGG	2 cut(s)	178, 231
BssMI	GATC	3 cut(s)	183, 190, 251
BssNI	GRCGYC	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	179, 303
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	170, 259
BstDEI	CTNAG	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	159, 174, 334
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	3 cut(s)	186, 193, 254
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	3 cut(s)	183, 190, 251
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	2 cut(s)	179, 303
BstSCI	CCNGG	2 cut(s)	177, 301
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	74, 245
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	159, 174, 334
Cac8I	GCNNGC	2 cut(s)	170, 259
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	260, 305
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	450
CviJI	RGCY	6 cut(s)	36, 86, 261, 367, 418, 450
CviKI_1	RGCY	6 cut(s)	36, 86, 261, 367, 418, 450
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	3 cut(s)	185, 192, 253
DpnII	GATC	3 cut(s)	183, 190, 251
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	177, 301
Esp3I	CGTCTC	1 cut(s)	433
FaiI	YATR	3 cut(s)	89, 195, 457
FbaI	TGATCA	1 cut(s)	190
FokI	GGATG	3 cut(s)	161, 166, 321
FspBI	CTAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	103, 110, 157, 428
HphI	GGTGA	2 cut(s)	247, 261
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	107, 114, 136, 432
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	49, 201, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	183, 190, 251
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	185, 192, 253
MboI	GATC	3 cut(s)	183, 190, 251
MboII	GAAGA	5 cut(s)	79, 217, 220, 250, 424
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	53, 310
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	179, 303
MvaI	CCWGG	2 cut(s)	179, 303
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	3 cut(s)	183, 190, 251
NlaIV	GGNNCC	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	103, 157, 428
PflFI	GACNNNGTC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	177, 301
PspGI	CCWGG	2 cut(s)	177, 301
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	260, 305
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	251
PsyI	GACNNNGTC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	76
Sau3AI	GATC	3 cut(s)	183, 190, 251
Sau96I	GGNCC	2 cut(s)	260, 305
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	179, 303
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	4 cut(s)	15, 48, 307, 420
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	53, 310
SsiI	CCGC	3 cut(s)	166, 288, 338
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	177, 301
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	53, 310
TfiI	GAWTC	3 cut(s)	103, 157, 428
TspGWI	ACGGA	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.