Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012426.1

Orthogroup ID

OG0024607

Physical Location & Seq

Genomic Coordinates Forward (+)

20456 .. 27709

Gene Structure 7254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012426.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcaatcgggtggaggaggaggaggtgggcccgggcggaacccgggagtggggccggcgggacgggcaacgtcgaattcgtcggctgcttcgccgtcgtcgtcgtcgtcggcggtgtcgacgccgcacttggggtttgattcggtgcagcagcaccagcagcatcagcaacagcagcagcagcagcagcagcaattggggtctagacaggtgagaaattttgtggctttttgtggaattggaatgtgggttgtggaattgggagtacgaactgaagcgaggaaagtacatgatcttttctttgatatcttgaaaattgcctttgctgacactgactttcgagaagccagaagtgcactctcttttaccagcccagttgtgaccaccaatgctctatccccaagaccaggtgttggacaaagcaagagacacaaattgataaatgaggtggaacctgaccccagtcctctacagaagccactacggggacctattatcagtagcgaagaaacaagggtaagaagccatatgccccagaaggaatcaagacttgggagtggtagtggtaatagtcgggagcactatcagccagaggattctccattgcttgctcatccaggagatctggttatttgcaagaagaagagaaaagacagggaaaagactggggtaaagactaggaatggaccagctggccctgtttcaccccctagcatgggtcgcagtattagaagtcctggaccaaattcagtcccaagggagacaagatcaacccaacaggcatcacattcacaagggtgggccaaccagccttcgcagcctgctcagcccgcaaacaggggtacgggatccgttggttgggcaaatccggtaaagaggttaaggacggattctggaaagagaaggccaagccatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

306

Amino Acids

32.88

Weight (kDa)

10.99

Isoelectric Point (pI)

72.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024607)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g09540
rosa_multiflora	Rmu_co8386449.1_g000001 Rmu_sc0012426.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	5 cut(s)	37, 59, 113, 125, 831
AclWI	GGATC	2 cut(s)	843, 856
AcsI	RAATTY	3 cut(s)	76, 217, 745
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	3 cut(s)	267, 288, 844
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	3 cut(s)	406, 616, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AleI	CACNNNNGTG	1 cut(s)	796
AluBI	AGCT	1 cut(s)	692
AluI	AGCT	1 cut(s)	692
Alw21I	GWGCWC	2 cut(s)	358, 582
Alw26I	GTCTC	2 cut(s)	421, 755
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	843, 856
Ama87I	CYCGRG	2 cut(s)	32, 43
AoxI	GGCC	5 cut(s)	29, 53, 694, 801, 905
ApaI	GGGCCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	354
ApoI	RAATTY	3 cut(s)	76, 217, 745
AspS9I	GGNCC	8 cut(s)	29, 30, 53, 488, 686, 695, 740, 801
AsuC2I	CCSGG	4 cut(s)	33, 34, 44, 45
AsuHPI	GGTGA	2 cut(s)	223, 696
AvaI	CYCGRG	2 cut(s)	32, 43
AvaII	GGWCC	3 cut(s)	488, 686, 740
BaeGI	GKGCMC	2 cut(s)	33, 358
BamHI	GGATCC	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	358, 582
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	3 cut(s)	408, 618, 738
BcnI	CCSGG	4 cut(s)	33, 34, 44, 45
BcoDI	GTCTC	2 cut(s)	421, 755
BfaI	CTAG	3 cut(s)	204, 678, 711
BfmI	CTRYAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	622
BlpI	GCTNAGC	1 cut(s)	825
Bme1390I	CCNGG	7 cut(s)	33, 34, 44, 45, 408, 618, 738
Bme18I	GGWCC	3 cut(s)	488, 686, 740
BmeT110I	CYCGRG	2 cut(s)	32, 43
BmgT120I	GGNCC	8 cut(s)	29, 30, 53, 488, 686, 695, 740, 801
BmiI	GGNNCC	6 cut(s)	31, 41, 54, 453, 489, 850
BmrFI	CCNGG	7 cut(s)	33, 34, 44, 45, 408, 618, 738
BmrI	ACTGGG	3 cut(s)	368, 456, 675
BmsI	GCATC	2 cut(s)	172, 791
BmuI	ACTGGG	3 cut(s)	368, 456, 675
BoxI	GACNNNNGTC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuMI	CCSGG	4 cut(s)	33, 34, 44, 45
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	32, 43, 755
BsaWI	WCCGGW	1 cut(s)	868
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 612, 642
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	3 cut(s)	374, 462, 670
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	3 cut(s)	408, 618, 738
BseDI	CCNNGG	3 cut(s)	32, 43, 755
BseGI	GGATG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	839
BseNI	ACTGG	3 cut(s)	374, 462, 670
BseRI	GAGGAG	3 cut(s)	30, 33, 36
BseSI	GKGCMC	2 cut(s)	33, 358
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	5 cut(s)	31, 55, 696, 803, 907
BsiHKAI	GWGCWC	2 cut(s)	358, 582
BsiHKCI	CYCGRG	2 cut(s)	32, 43
BsiSI	CCGG	4 cut(s)	33, 44, 56, 869
BslFI	GGGAC	3 cut(s)	75, 501, 737
BsmAI	GTCTC	2 cut(s)	421, 755
BsmFI	GGGAC	3 cut(s)	75, 501, 737
BsnI	GGCC	5 cut(s)	31, 55, 696, 803, 907
BsoBI	CYCGRG	2 cut(s)	32, 43
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	33, 358, 582
Bsp143I	GATC	4 cut(s)	292, 622, 767, 848
Bsp1720I	GCTNAGC	1 cut(s)	825
BspACI	CCGC	5 cut(s)	37, 59, 113, 125, 831
BspANI	GGCC	5 cut(s)	31, 55, 696, 803, 907
BspCNI	CTCAG	1 cut(s)	838
BspLI	GGNNCC	6 cut(s)	31, 41, 54, 453, 489, 850
BspPI	GGATC	2 cut(s)	843, 856
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	374, 462, 670
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	32, 43, 755
BssMI	GATC	4 cut(s)	292, 622, 767, 848
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	3 cut(s)	408, 618, 738
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	57, 609, 694, 822, 831
BstDEI	CTNAG	1 cut(s)	825
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	4 cut(s)	295, 625, 770, 851
BstMAI	GTCTC	2 cut(s)	421, 755
BstMBI	GATC	4 cut(s)	292, 622, 767, 848
BstNI	CCWGG	3 cut(s)	408, 618, 738
BstPAI	GACNNNNGTC	1 cut(s)	462
BstSCI	CCNGG	7 cut(s)	31, 32, 42, 43, 406, 616, 736
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	2 cut(s)	33, 358
BstX2I	RGATCY	2 cut(s)	622, 848
BstYI	RGATCY	2 cut(s)	622, 848
BsuRI	GGCC	5 cut(s)	31, 55, 696, 803, 907
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	5 cut(s)	57, 609, 694, 822, 831
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	8 cut(s)	29, 30, 53, 488, 686, 695, 740, 801
Cfr9I	CCCGGG	2 cut(s)	32, 43
CseI	GACGC	1 cut(s)	130
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	266, 287, 843
CviAII	CATG	2 cut(s)	290, 715
CviQI	GTAC	3 cut(s)	266, 287, 843
DdeI	CTNAG	1 cut(s)	825
DpnI	GATC	4 cut(s)	294, 624, 769, 850
DpnII	GATC	4 cut(s)	292, 622, 767, 848
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	3 cut(s)	488, 686, 740
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	32, 43
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	3 cut(s)	406, 616, 736
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	2 cut(s)	293, 718
FaiI	YATR	5 cut(s)	291, 528, 530, 716, 919
FaqI	GGGAC	3 cut(s)	75, 501, 737
FatI	CATG	2 cut(s)	289, 714
FauI	CCCGC	2 cut(s)	52, 838
FauNDI	CATATG	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	119
FokI	GGATG	1 cut(s)	600
FriOI	GRGCYC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	204, 678, 711
HaeIII	GGCC	5 cut(s)	31, 55, 696, 803, 907
HapII	CCGG	4 cut(s)	33, 44, 56, 869
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	293, 718
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	140, 542, 596, 890
HpaII	CCGG	4 cut(s)	33, 44, 56, 869
HphI	GGTGA	2 cut(s)	223, 696
Hpy166II	GTNNAC	2 cut(s)	120, 356
Hpy188III	TCNNGA	6 cut(s)	204, 310, 341, 546, 575, 894
Hpy8I	GTNNAC	2 cut(s)	120, 356
Hpy99I	CGWCG	8 cut(s)	76, 85, 100, 103, 106, 109, 112, 124
HpyAV	CCTTC	3 cut(s)	532, 822, 897
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	4, 148, 356, 636
HpyF3I	CTNAG	1 cut(s)	825
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	293, 718
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	292, 622, 767, 848
LmnI	GCTCC	1 cut(s)	577
LweI	GCATC	2 cut(s)	172, 791
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	3 cut(s)	204, 678, 711
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	4 cut(s)	294, 624, 769, 850
MboI	GATC	4 cut(s)	292, 622, 767, 848
MboII	GAAGA	3 cut(s)	518, 652, 655
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	622, 848
MhlI	GDGCHC	3 cut(s)	33, 358, 582
MluCI	AATT	8 cut(s)	76, 194, 217, 237, 257, 315, 434, 745
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	8, 11, 14, 17, 273, 439, 477, 586, 870
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	881
MslI	CAYNNNNRTG	1 cut(s)	796
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	4 cut(s)	33, 44, 56, 869
MspR9I	CCNGG	7 cut(s)	33, 34, 44, 45, 408, 618, 738
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	408, 618, 738
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	4 cut(s)	33, 34, 44, 45
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	4 cut(s)	292, 622, 767, 848
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	293, 718
NlaIV	GGNNCC	6 cut(s)	31, 41, 54, 453, 489, 850
NmuCI	GTSAC	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	4 cut(s)	77, 98, 104, 116
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	140, 542, 596, 890
PflMI	CCANNNNNTGG	1 cut(s)	413
PfoI	TCCNGGA	2 cut(s)	616, 736
PpuMI	RGGWCCY	1 cut(s)	488
PshAI	GACNNNNGTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	3 cut(s)	406, 616, 736
PspGI	CCWGG	3 cut(s)	406, 616, 736
PspN4I	GGNNCC	6 cut(s)	31, 41, 54, 453, 489, 850
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	8 cut(s)	29, 30, 53, 488, 686, 695, 740, 801
PspPPI	RGGWCCY	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	622, 848
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	267, 288, 844
RsaNI	GTAC	3 cut(s)	266, 287, 843
RseI	CAYNNNNRTG	1 cut(s)	796
SalI	GTCGAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	881
Sau3AI	GATC	4 cut(s)	292, 622, 767, 848
Sau96I	GGNCC	8 cut(s)	29, 30, 53, 488, 686, 695, 740, 801
ScrFI	CCNGG	7 cut(s)	33, 34, 44, 45, 408, 618, 738
SduI	GDGCHC	3 cut(s)	33, 358, 582
SetI	ASST	9 cut(s)	28, 74, 213, 412, 450, 457, 493, 694, 881
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	172, 791
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	3 cut(s)	488, 686, 740
SmaI	CCCGGG	2 cut(s)	34, 45
SmiMI	CAYNNNNRTG	1 cut(s)	796
SrfI	GCCCGGGC	1 cut(s)	34
Sse9I	AATT	8 cut(s)	76, 194, 217, 237, 257, 315, 434, 745
SsiI	CCGC	5 cut(s)	37, 59, 113, 125, 831
SspMI	CTAG	3 cut(s)	204, 678, 711
StyD4I	CCNGG	7 cut(s)	31, 32, 42, 43, 406, 616, 736
StyI	CCWWGG	1 cut(s)	755
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	74, 119, 340
TasI	AATT	8 cut(s)	76, 194, 217, 237, 257, 315, 434, 745
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	4 cut(s)	140, 542, 596, 890
Tru1I	TTAA	1 cut(s)	881
Tru9I	TTAA	1 cut(s)	881
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspGWI	ACGGA	2 cut(s)	841, 902
TspMI	CCCGGG	2 cut(s)	32, 43
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	3 cut(s)	488, 686, 740
XapI	RAATTY	3 cut(s)	76, 217, 745
XbaI	TCTAGA	1 cut(s)	203
XmaI	CCCGGG	2 cut(s)	32, 43
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	3 cut(s)	204, 678, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.