Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386449.1

Orthogroup ID

OG0024607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 837

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386449.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgccccagaaggaatcaagacttgggagtggtagtggtaatagtcgggagcactatcagccagaggattctccattgcttgctcatccaggagatctggttatttgcaagaagaagagaaaagacagggaaaagactggggtaaagactaggaatggaccagctggccctgtttcaccccctagcatgggtcgcagtattagaagtcctggaccaaattcagtcccaagggagacaagatcaacccaacaggcatcacattcacaagggtgggccaaccagccttcgcagcctgctcagcccgcaaacaggggtacgggatccgttggttgggcaaatccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

114

Amino Acids

12.17

Weight (kDa)

10.67

Isoelectric Point (pI)

70.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024607)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g09540
rosa_multiflora	Rmu_co8386449.1_g000001 Rmu_sc0012426.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	315, 328
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	187, 188, 309, 330
AjnI	CCWGG	2 cut(s)	88, 208
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	315, 328
AoxI	GGCC	2 cut(s)	166, 273
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	4 cut(s)	158, 167, 212, 273
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	2 cut(s)	158, 212
BamHI	GGATCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	90, 210
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	150, 183
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	1 cut(s)	290
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	90, 210
Bme18I	GGWCC	2 cut(s)	158, 212
BmgT120I	GGNCC	4 cut(s)	158, 167, 212, 273
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	90, 210
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 188, 309, 330
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	90, 210
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	4 cut(s)	187, 188, 309, 330
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	2 cut(s)	168, 275
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	187, 188, 309, 330
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	168, 275
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	94, 239, 320
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	168, 275
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	315, 328
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	3 cut(s)	94, 239, 320
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	90, 210
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	4 cut(s)	81, 166, 294, 303
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	97, 242, 323
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	94, 239, 320
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 192, 289, 298, 302
BstNI	CCWGG	2 cut(s)	90, 210
BstSCI	CCNGG	2 cut(s)	88, 208
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	94, 320
BstYI	RGATCY	2 cut(s)	94, 320
BsuRI	GGCC	2 cut(s)	168, 275
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	4 cut(s)	81, 166, 294, 303
Cfr13I	GGNCC	4 cut(s)	158, 167, 212, 273
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	61, 164, 168, 275, 283, 292, 301
CviKI_1	RGCY	7 cut(s)	61, 164, 168, 275, 283, 292, 301
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	96, 241, 322
DpnII	GATC	3 cut(s)	94, 239, 320
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	158, 212
EcoRII	CCWGG	2 cut(s)	88, 208
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	150, 183
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	168, 275
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	14, 68
HphI	GGTGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	18, 47
HpyAV	CCTTC	2 cut(s)	4, 294
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 192, 289, 298, 302
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	94, 239, 320
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	150, 183
MalI	GATC	3 cut(s)	96, 241, 322
MboI	GATC	3 cut(s)	94, 239, 320
MboII	GAAGA	2 cut(s)	124, 127
MflI	RGATCY	2 cut(s)	94, 320
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	1 cut(s)	58
MslI	CAYNNNNRTG	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	90, 210
MvaI	CCWGG	2 cut(s)	90, 210
MwoI	GCNNNNNNNGC	5 cut(s)	58, 192, 289, 298, 302
NdeII	GATC	3 cut(s)	94, 239, 320
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	14, 68
PfoI	TCCNGGA	2 cut(s)	88, 208
PkrI	GCNGC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	88, 208
PspGI	CCWGG	2 cut(s)	88, 208
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	4 cut(s)	158, 167, 212, 273
PsuI	RGATCY	2 cut(s)	94, 320
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	268
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	94, 239, 320
Sau96I	GGNCC	4 cut(s)	158, 167, 212, 273
ScrFI	CCNGG	2 cut(s)	90, 210
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	263
SinI	GGWCC	2 cut(s)	158, 212
SmiMI	CAYNNNNRTG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	2 cut(s)	150, 183
StyD4I	CCNGG	2 cut(s)	88, 208
StyI	CCWWGG	1 cut(s)	227
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	14, 68
TseI	GCWGC	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	158, 212
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	2 cut(s)	150, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.