pycom01g13370

L-threonine ammonia-lyase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
13845455 .. 13845742
288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGCGATTGGAAGGGTTCACACTTAATACCCCAGTTCATGTTTTTATTGATTCGGGAGCTGCCCAAAGTTTCCTCAACCCTCAGGTGGCTGCCCGTTTGGGTTTGGCCATTGATTCATCATGCAGTGAGGCTGTCATGGTCGCAATAAGTCGCTATTTTTGTACCAAAGGTTTGGCTTCCAATGTCTCAGCGTGGCTACATGGGTATGCATTCAGGAGCAATTTTCACCTTCTCGTAATCGCATGCTGTGACATGATACTTGGCGTTGACTGGTTAGAGACGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

5.78

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 8 - 93 1.1e-08 Retroviral aspartyl protease
gag-asp_proteas PF13975 10 - 93 2.1e-06 gag-polyprotein putative aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021839)

Species Orthologous Gene IDs
pyrus_communis pycom01g13370
rosa_chinensis RchiOBHm_Chr2g0105641
rosa_roxburghii Rroxscaffold_7G00199100
rosa_samantha Rh3CG227300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 190, 272
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 59, 89
AsuHPI GGTGA 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 81
BalI TGGCCA 1 cut(s) 107
BbvI GCAGC 2 cut(s) 46, 76
BcoDI GTCTC 2 cut(s) 190, 272
BisI GCNGC 2 cut(s) 60, 90
BlsI GCNGC 2 cut(s) 61, 91
BmrI ACTGGG 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 32, 275
Bse21I CCTNAGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 95, 201
BseNI ACTGG 2 cut(s) 32, 275
BseXI GCAGC 2 cut(s) 46, 76
BshFI GGCC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 190, 272
BsmBI CGTCTC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 107
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 94, 200
BsrI ACTGG 2 cut(s) 32, 275
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 81, 187
BstMAI GTCTC 2 cut(s) 190, 272
BstNSI RCATGY 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 46, 76
BstXI CCANNNNNNTGG 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 162
CviAII CATG 6 cut(s) 38, 120, 136, 200, 243, 253
CviJI RGCY 6 cut(s) 59, 89, 107, 131, 176, 196
CviKI_1 RGCY 6 cut(s) 59, 89, 107, 131, 176, 196
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 81, 187
EaeI YGGCCR 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 6 cut(s) 41, 123, 139, 203, 246, 256
FaiI YATR 8 cut(s) 39, 121, 137, 201, 207, 244, 254, 286
FatI CATG 6 cut(s) 37, 119, 135, 199, 242, 252
Fnu4HI GCNGC 2 cut(s) 60, 90
Fsp4HI GCNGC 2 cut(s) 60, 90
GluI GCNGC 2 cut(s) 60, 90
HaeIII GGCC 1 cut(s) 107
Hin1II CATG 6 cut(s) 41, 123, 139, 203, 246, 256
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 50, 113
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 18, 268
Hpy188III TCNNGA 2 cut(s) 54, 214
Hpy8I GTNNAC 2 cut(s) 18, 268
HpyAV CCTTC 2 cut(s) 5, 239
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 123, 209
HpyF3I CTNAG 2 cut(s) 81, 187
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 6 cut(s) 41, 123, 139, 203, 246, 256
LmnI GCTCC 2 cut(s) 56, 216
LpnPI CCDG 4 cut(s) 45, 68, 199, 256
Lsp1109I GCAGC 2 cut(s) 46, 76
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 1 cut(s) 220
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 3 cut(s) 83, 90, 121
Mox20I TGGCCA 1 cut(s) 107
Mph1103I ATGCAT 1 cut(s) 211
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 209
NlaIII CATG 6 cut(s) 41, 123, 139, 203, 246, 256
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 50, 113
PkrI GCNGC 2 cut(s) 61, 91
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 60, 90
SetI ASST 5 cut(s) 61, 87, 172, 231, 284
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 246
Sse9I AATT 1 cut(s) 220
TaiI ACGT 1 cut(s) 284
TasI AATT 1 cut(s) 220
TfiI GAWTC 2 cut(s) 50, 113
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 59, 89
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 26, 105
TspRI CASTG 1 cut(s) 130
XceI RCATGY 1 cut(s) 246
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.