RchiOBHm_Chr2g0105641

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
16933082 .. 16933426
345 bp
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UTR
Exon/CDS
Intron
PRQ47983

Sequence Viewer

Length: 216 bp
ATGGATTTTATATGTTTTCCCCTGGGCCCTTCGTTTTCAAATGCCCAGATTTCAGATTTGCAGAGATTGCGTCCAGGCTCAAGGACTTTGGAAATCAGCGCTTCCGTTTTTGTCCGGTTGTTGTGGTTTGGTTGTTGTTGCTTACGGAGGATTATGTGGGGATTTGAACTTTCCGGATGTAATATATGTACTTGGATTGTAAATTTAATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.12

Weight (kDa)

8.32

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021839)

Species Orthologous Gene IDs
pyrus_communis pycom01g13370
rosa_chinensis RchiOBHm_Chr2g0105641
rosa_roxburghii Rroxscaffold_7G00199100
rosa_samantha Rh3CG227300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 173
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 39, 167
AjnI CCWGG 2 cut(s) 21, 73
Aor13HI TCCGGA 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 25
ApaI GGGCCC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 25, 26
BaeGI GKGCMC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 23, 75
BfoI RGCGCY 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 23, 75
BmgT120I GGNCC 2 cut(s) 25, 26
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 23, 75
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 21, 22
BsaWI WCCGGW 2 cut(s) 114, 173
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 23, 75
BseDI CCNNGG 2 cut(s) 21, 22
BseGI GGATG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 29
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 115, 174
BsnI GGCC 1 cut(s) 27
Bsp120I GGGCCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 173
BspANI GGCC 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 21, 22
Bst2UI CCWGG 2 cut(s) 23, 75
BstAPI GCANNNNNTGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 2 cut(s) 23, 75
BstSCI CCNGG 2 cut(s) 21, 73
BstSLI GKGCMC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 182
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 25, 26
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 189
CviJI RGCY 2 cut(s) 27, 78
CviKI_1 RGCY 2 cut(s) 27, 78
CviQI GTAC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 29
Eco47III AGCGCT 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 21, 73
EcoT38I GRGCYC 1 cut(s) 29
FaiI YATR 5 cut(s) 11, 13, 155, 185, 187
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 29
GlaI GCGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 115, 174
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HpaII CCGG 2 cut(s) 115, 174
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 173
LpnPI CCDG 7 cut(s) 8, 35, 59, 60, 87, 128, 187
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 1 cut(s) 202
MnlI CCTC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 173
MseI TTAA 1 cut(s) 206
MspI CCGG 2 cut(s) 115, 174
MspR9I CCNGG 2 cut(s) 23, 75
MvaI CCWGG 2 cut(s) 23, 75
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 27
PasI CCCWGGG 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 21, 73
PspGI CCWGG 2 cut(s) 21, 73
PspN4I GGNNCC 1 cut(s) 27
PspOMI GGGCCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 25, 26
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 206
Sau96I GGNCC 2 cut(s) 25, 26
ScrFI CCNGG 2 cut(s) 23, 75
SduI GDGCHC 1 cut(s) 29
SgeI CNNG 9 cut(s) 34, 35, 58, 86, 87, 93, 127, 186, 204
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 202
SspI AATATT 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 21, 73
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TspGWI ACGGA 2 cut(s) 94, 160
XapI RAATTY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.