pycom01g14850

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0024610
Physical Location & Seq
Forward (+)
14931752 .. 14932407
656 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14850.1

Sequence Viewer

Length: 519 bp
ATGAAAGAGGCAGCCAGAATAGCAAATGCTCACCATTTCATCAGCAGCTTGCCGCATGGTTATGATACGCATGTGGGGATGAGGGGTGTTGACTTGACCCCGGGACAGAAACAGAGAATTGCAATAGCACGCGTCGTGCTAAAGAATGCCCCCATCTTACTATTGGATGAAGCAAGCTCGTCCATTGAATCCGAATCTAGTCGAGTGGTGCAGGAGGCTCTTGATACATTAATCATGGGGAACAAAACAACCATTTTGATAGCCCATAGAGCTGCAATGATGAGGCATGTCGATAACATTGTAGTTCTCAACGGAGGGAGAATTGTGGAAGAAGGGTCCCATGATAATCTAATATCAAAGAATGGCCTCTATGTCCGTTTGATGCAACCACACTTTGGCAAGAGTTTGCGTCAGCGTCGCCTCGTTTGGACATTGTCTGAGAATGAGAATCGGAGTGTTTATAGCGGAATGAGGCACGGAATGCAGAGGCGGATTCGTAGTCATATTGTTCAAATCTAG

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

10.43

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 12 - 59 1.1e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024610)

Species Orthologous Gene IDs
pyrus_communis pycom01g14850 pycom07g18050
rosa_samantha Rh1DG326000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 395
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 53, 465, 490
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 188, 512
AluBI AGCT 3 cut(s) 48, 177, 272
AluI AGCT 3 cut(s) 48, 177, 272
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 11, 45, 272
AseI ATTAAT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 336
AsuC2I CCSGG 2 cut(s) 101, 102
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 336
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BbvI GCAGC 3 cut(s) 23, 57, 259
BccI CCATC 1 cut(s) 161
BcnI CCSGG 2 cut(s) 101, 102
BfaI CTAG 2 cut(s) 198, 517
BisI GCNGC 4 cut(s) 12, 46, 53, 273
BlsI GCNGC 4 cut(s) 13, 47, 54, 274
Bme1390I CCNGG 2 cut(s) 101, 102
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 337, 338
BmrFI CCNGG 2 cut(s) 101, 102
BmsI GCATC 1 cut(s) 372
BpuMI CCSGG 2 cut(s) 101, 102
BsaJI CCNNGG 2 cut(s) 99, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 99, 100
BseGI GGATG 2 cut(s) 84, 172
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 23, 57, 259
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 117, 322
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 117, 322
BsmI GAATGC 2 cut(s) 151, 486
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 100
BspACI CCGC 3 cut(s) 53, 465, 490
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 430
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 337, 338
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 99, 100
BstAPI GCANNNNNTGC 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 50, 130, 175
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 84, 172
BstFNI CGCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 20, 269, 481
BstNSI RCATGY 2 cut(s) 74, 290
BstSCI CCNGG 2 cut(s) 99, 100
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 23, 57, 259
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 84, 172
Cac8I GCNNGC 3 cut(s) 50, 130, 175
Cfr13I GGNCC 1 cut(s) 336
Cfr9I CCCGGG 1 cut(s) 100
CseI GACGC 3 cut(s) 121, 398, 404
CviAII CATG 5 cut(s) 56, 71, 235, 287, 341
CviJI RGCY 7 cut(s) 14, 48, 177, 218, 263, 272, 366
CviKI_1 RGCY 7 cut(s) 14, 48, 177, 218, 263, 272, 366
DdeI CTNAG 1 cut(s) 438
EciI GGCGGA 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 336
FaeI CATG 5 cut(s) 59, 74, 238, 290, 344
FaqI GGGAC 2 cut(s) 117, 322
FatI CATG 5 cut(s) 55, 70, 234, 286, 340
Fnu4HI GCNGC 4 cut(s) 12, 46, 53, 273
FokI GGATG 2 cut(s) 91, 179
Fsp4HI GCNGC 4 cut(s) 12, 46, 53, 273
FspBI CTAG 2 cut(s) 198, 517
GluI GCNGC 4 cut(s) 12, 46, 53, 273
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 101
HgaI GACGC 3 cut(s) 121, 398, 404
Hin1II CATG 5 cut(s) 59, 74, 238, 290, 344
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 4 cut(s) 188, 194, 448, 493
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 193, 439, 453
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 137, 420
HpyAV CCTTC 1 cut(s) 326
HpyCH4V TGCA 5 cut(s) 122, 211, 275, 385, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 269, 481
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 5 cut(s) 59, 74, 238, 290, 344
KflI GGGWCCC 1 cut(s) 336
LpnPI CCDG 3 cut(s) 28, 114, 197
Lsp1109I GCAGC 3 cut(s) 23, 57, 259
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 198, 517
MboII GAAGA 1 cut(s) 341
MluCI AATT 2 cut(s) 117, 321
MluI ACGCGT 1 cut(s) 130
MnlI CCTC 8 cut(s) 75, 208, 276, 308, 377, 431, 465, 480
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 101, 102
Mva1269I GAATGC 2 cut(s) 151, 486
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 20, 269, 481
NciI CCSGG 2 cut(s) 101, 102
NlaIII CATG 5 cut(s) 59, 74, 238, 290, 344
NlaIV GGNNCC 2 cut(s) 337, 338
NspI RCATGY 2 cut(s) 74, 290
PctI GAATGC 2 cut(s) 151, 486
PfeI GAWTC 4 cut(s) 188, 194, 448, 493
PflFI GACNNNGTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 4 cut(s) 13, 47, 54, 274
PpuMI RGGWCCY 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 337, 338
PspPI GGNCC 1 cut(s) 336
PspPPI RGGWCCY 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 4 cut(s) 12, 46, 53, 273
Sau96I GGNCC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 101, 102
SetI ASST 3 cut(s) 50, 179, 274
SfaNI GCATC 1 cut(s) 372
SinI GGWCC 1 cut(s) 336
SmaI CCCGGG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 117, 321
SsiI CCGC 3 cut(s) 53, 465, 490
SspMI CTAG 2 cut(s) 198, 517
StyD4I CCNGG 2 cut(s) 99, 100
TaqI TCGA 2 cut(s) 202, 291
TasI AATT 2 cut(s) 117, 321
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 4 cut(s) 188, 194, 448, 493
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 3 cut(s) 11, 45, 272
TspDTI ATGAA 3 cut(s) 17, 28, 183
TspGWI ACGGA 3 cut(s) 327, 365, 492
TspMI CCCGGG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 433
Van91I CCANNNNNTGG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 336
VspI ATTAAT 1 cut(s) 230
XceI RCATGY 2 cut(s) 74, 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmaI CCCGGG 1 cut(s) 100
XspI CTAG 2 cut(s) 198, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.