Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024610

Physical Location & Seq

Genomic Coordinates Forward (+)

20571176 .. 20573454

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGCGCTTGGCCAATGATGCTACATTTGTACGAGCTGCTTTCAGCAATCGGCTGTCAATATTTATACAGGATAGTGCTGCTGTTATTGTGGCTCTTCTTATTGGGATGCTGCTACAATGGCGATTAGCACTTGTGGCTTTGGCAACCCTACCAGTTCTCACTCTTTCTGCCATTGCACAGAAATTATGGCTTGCTGGTTTTTCAAGGGGTATTCAGGAGATGCACAGGAAGGCATCTTTGGTTCTCGAGGATGCGGTTAGAAACATTTACACTGTTGTAGCATTCTGTGCTGGTAACAAGGTAATGGAGCTCTACAGGTTGCAGCTAAAGAAAATATTCAAGCAGAGTTTCTTTCATGGAATGGCCATTGGATTTGCATTTGGCTTTTCGCAGTTCCTTCTTTTCGCCTGCAATGCCCTTCTCCTCTGGTACACTGCACGCATGGTGAAATATGAGCATATGGAATTACCTACTGCTATCAAGGAGTATATGGTTTTCTCTTTTGCTACATTTGCACTTGTAGAACCTTTTGGGTTGGCTCCTTACATCCTAAAACGCCGAAAATCCCTCATTTCAGTTTTTGAAATCATAGATCGAGTGCCGAAGATTGAGCCAGATGAAAACTCAGCGATGAAGCCACCTAATGTTTATGGAAGCCTTGAGTTGAAAAATGTTGACTTCTGTTATCCAACTCGCCCAGAACTGTTGGTACTGAGCAATTTCAGTCTCAAAGTAAATGGGGGGCAAACTGTAGCTGTGGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATTTCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGTCAAGTCTTACTGGATGGTCGAGATCTGAAAGTTTATAATTTGAGAAGGTTGAGGAACCACCTAGGTCTTGTTCAGCAGGAGCCCATTATATTCTCAACAACCATTCGGGAAAATATTATATATGCAAGGCACAATGCTAGTGAGGCCGAGATGAAAGAGGCAGCCAGAATAGCAAATGCTCACCATTTCATCAGCAGCTTGCCTCATGGTTATGATACGCATGTGGGGATGAGAGGTGTTGACTTGACCCCGGGACAGAAACAGCGGATTGCAATAGCACGTGTCGTGCTAAAGAATGCCCCCATCTTATTATTGGATGAAGCAAGCTCGTCCATTGAATCCGAATCAAGTCGAGTGGTTCAGGAGGCTCTTGATACATTAATCATGGGGAACAAAACAACTATTTTGATAGCCCATAGAGCTGCAATGATGAGGCATGTTGATAACATTGTAGTTCTCAACGGAGGGAGAATTGTGGAAGAAGGGTCCCATGATAATTTAATGTCAAAGAATGGTCTCTATGTCCGTTTGATGCAACCGCAGTATGGCAAGGGTTTGCGTCAGCATAGACTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

470

Amino Acids

52.47

Weight (kDa)

9.61

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024610)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14850 pycom07g18050
rosa_samantha	Rh1DG326000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AccB7I	CCANNNNNTGG	1 cut(s)	827
AciI	CCGC	3 cut(s)	254, 1096, 1370
AclWI	GGATC	1 cut(s)	812
AcoI	YGGCCR	2 cut(s)	9, 363
AcvI	CACGTG	1 cut(s)	1112
AfaI	GTAC	3 cut(s)	30, 431, 711
AfiI	CCNNNNNNNGG	2 cut(s)	827, 1376
AflIII	ACRYGT	1 cut(s)	1111
AgsI	TTSAA	5 cut(s)	204, 340, 584, 667, 1169
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	7 cut(s)	35, 310, 325, 755, 1029, 1158, 1253
AluI	AGCT	7 cut(s)	35, 310, 325, 755, 1029, 1158, 1253
Alw21I	GWGCWC	2 cut(s)	312, 788
Alw26I	GTCTC	2 cut(s)	731, 1352
AlwI	GGATC	1 cut(s)	812
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	2 cut(s)	245, 1081
AoxI	GGCC	3 cut(s)	9, 363, 975
ApeKI	GCWGC	7 cut(s)	35, 77, 109, 322, 992, 1026, 1253
AseI	ATTAAT	1 cut(s)	1211
Asp700I	GAANNNNTTC	1 cut(s)	335
AspA2I	CCTAGG	1 cut(s)	892
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	1317
AsuC2I	CCSGG	2 cut(s)	1082, 1083
AsuHPI	GGTGA	2 cut(s)	457, 1004
AvaI	CYCGRG	2 cut(s)	245, 1081
AvaII	GGWCC	1 cut(s)	1317
AvrII	CCTAGG	1 cut(s)	892
BaeI	ACNNNNGTAYC	2 cut(s)	1038, 1071
BalI	TGGCCA	2 cut(s)	11, 365
BanII	GRGCYC	2 cut(s)	312, 915
BbrPI	CACGTG	1 cut(s)	1112
Bbv12I	GWGCWC	2 cut(s)	312, 788
BbvI	GCAGC	7 cut(s)	22, 64, 96, 334, 1004, 1038, 1240
BccI	CCATC	2 cut(s)	839, 1142
BcnI	CCSGG	2 cut(s)	1082, 1083
BcoDI	GTCTC	2 cut(s)	731, 1352
BfaI	CTAG	3 cut(s)	893, 969, 1408
BfmI	CTRYAG	2 cut(s)	313, 750
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	7 cut(s)	36, 78, 110, 323, 993, 1027, 1254
BlnI	CCTAGG	1 cut(s)	892
BlsI	GCNGC	7 cut(s)	37, 79, 111, 324, 994, 1028, 1255
Bme1390I	CCNGG	2 cut(s)	1082, 1083
Bme18I	GGWCC	1 cut(s)	1317
BmeT110I	CYCGRG	2 cut(s)	245, 1081
BmgT120I	GGNCC	1 cut(s)	1317
BmiI	GGNNCC	5 cut(s)	540, 887, 912, 1318, 1319
BmrFI	CCNGG	2 cut(s)	1082, 1083
BmsI	GCATC	6 cut(s)	7, 96, 210, 241, 242, 1353
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	2 cut(s)	1082, 1083
BsaAI	YACGTR	1 cut(s)	1112
BsaI	GGTCTC	1 cut(s)	1352
BsaJI	CCNNGG	3 cut(s)	892, 1080, 1081
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 1376
Bse1I	ACTGG	3 cut(s)	152, 821, 846
Bse3DI	GCAATG	3 cut(s)	171, 418, 1263
BseDI	CCNNGG	3 cut(s)	892, 1080, 1081
BseGI	GGATG	6 cut(s)	111, 256, 546, 850, 1065, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	827, 1376
BseMI	GCAATG	3 cut(s)	171, 418, 1263
BseMII	CTCAG	2 cut(s)	639, 704
BseNI	ACTGG	3 cut(s)	152, 821, 846
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	7 cut(s)	22, 64, 96, 334, 1004, 1038, 1240
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	11, 365, 977
BsiHKAI	GWGCWC	2 cut(s)	312, 788
BsiHKCI	CYCGRG	2 cut(s)	245, 1081
BsiSI	CCGG	1 cut(s)	1082
BslFI	GGGAC	2 cut(s)	1098, 1303
BslI	CCNNNNNNNGG	2 cut(s)	827, 1376
BsmAI	GTCTC	2 cut(s)	731, 1352
BsmFI	GGGAC	2 cut(s)	1098, 1303
BsmI	GAATGC	2 cut(s)	281, 1132
BsnI	GGCC	3 cut(s)	11, 365, 977
Bso31I	GGTCTC	1 cut(s)	1352
BsoBI	CYCGRG	2 cut(s)	245, 1081
Bsp1286I	GDGCHC	3 cut(s)	312, 788, 915
Bsp143I	GATC	3 cut(s)	592, 817, 853
BspACI	CCGC	3 cut(s)	254, 1096, 1370
BspANI	GGCC	3 cut(s)	11, 365, 977
BspCNI	CTCAG	2 cut(s)	638, 705
BspLI	GGNNCC	5 cut(s)	540, 887, 912, 1318, 1319
BspPI	GGATC	1 cut(s)	812
BspQI	GCTCTTC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	1352
BsrDI	GCAATG	3 cut(s)	171, 418, 1263
BsrI	ACTGG	3 cut(s)	152, 821, 846
BssECI	CCNNGG	3 cut(s)	892, 1080, 1081
BssMI	GATC	3 cut(s)	592, 817, 853
BssT1I	CCWWGG	1 cut(s)	892
Bst4CI	ACNGT	3 cut(s)	274, 705, 751
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	1112
BstC8I	GCNNGC	5 cut(s)	192, 409, 439, 1031, 1156
BstDEI	CTNAG	2 cut(s)	625, 713
BstF5I	GGATG	6 cut(s)	111, 256, 546, 850, 1065, 1153
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	595, 820, 856
BstMAI	GTCTC	2 cut(s)	731, 1352
BstMBI	GATC	3 cut(s)	592, 817, 853
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 118, 134, 287, 413, 512, 974, 1001, 1250
BstNSI	RCATGY	2 cut(s)	1055, 1271
BstSCI	CCNGG	2 cut(s)	1080, 1081
BstSFI	CTRYAG	2 cut(s)	313, 750
BstV1I	GCAGC	7 cut(s)	22, 64, 96, 334, 1004, 1038, 1240
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	11, 365, 977
BtgZI	GCGATG	1 cut(s)	644
BtsCI	GGATG	6 cut(s)	111, 256, 546, 850, 1065, 1153
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	270, 432
Cac8I	GCNNGC	5 cut(s)	192, 409, 439, 1031, 1156
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	1317
Cfr9I	CCCGGG	1 cut(s)	1081
CseI	GACGC	1 cut(s)	1379
Csp6I	GTAC	3 cut(s)	29, 430, 710
CspCI	CAANNNNNGTGG	2 cut(s)	1167, 1202
CviAII	CATG	7 cut(s)	356, 442, 1037, 1052, 1216, 1268, 1322
CviQI	GTAC	3 cut(s)	29, 430, 710
DdeI	CTNAG	2 cut(s)	625, 713
DpnI	GATC	3 cut(s)	594, 819, 855
DpnII	GATC	3 cut(s)	592, 817, 853
EaeI	YGGCCR	2 cut(s)	9, 363
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	2 cut(s)	312, 915
Eco31I	GGTCTC	1 cut(s)	1352
Eco47I	GGWCC	1 cut(s)	1317
Eco53kI	GAGCTC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	1112
Eco88I	CYCGRG	2 cut(s)	245, 1081
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	1317
EcoT14I	CCWWGG	1 cut(s)	892
EcoT38I	GRGCYC	2 cut(s)	312, 915
ErhI	CCWWGG	1 cut(s)	892
FaeI	CATG	7 cut(s)	359, 445, 1040, 1055, 1219, 1271, 1325
FaqI	GGGAC	2 cut(s)	1098, 1303
FatI	CATG	7 cut(s)	355, 441, 1036, 1051, 1215, 1267, 1321
FauNDI	CATATG	1 cut(s)	459
Fnu4HI	GCNGC	7 cut(s)	36, 78, 110, 323, 993, 1027, 1254
FokI	GGATG	6 cut(s)	118, 263, 533, 857, 1072, 1160
FriOI	GRGCYC	2 cut(s)	312, 915
Fsp4HI	GCNGC	7 cut(s)	36, 78, 110, 323, 993, 1027, 1254
FspBI	CTAG	3 cut(s)	893, 969, 1408
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	7 cut(s)	36, 78, 110, 323, 993, 1027, 1254
HaeIII	GGCC	3 cut(s)	11, 365, 977
HapII	CCGG	1 cut(s)	1082
HgaI	GACGC	1 cut(s)	1379
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	7 cut(s)	359, 445, 1040, 1055, 1219, 1271, 1325
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	676, 1072
HindII	GTYRAC	2 cut(s)	676, 1072
HinfI	GANTC	3 cut(s)	1169, 1175, 1401
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	2 cut(s)	457, 1004
Hpy166II	GTNNAC	3 cut(s)	432, 676, 1072
Hpy188I	TCNGA	2 cut(s)	858, 1174
Hpy188III	TCNNGA	7 cut(s)	215, 245, 777, 851, 938, 1193, 1202
Hpy8I	GTNNAC	3 cut(s)	432, 676, 1072
HpyAV	CCTTC	5 cut(s)	223, 407, 428, 870, 1307
HpyCH4III	ACNGT	3 cut(s)	274, 705, 751
HpyCH4IV	ACGT	1 cut(s)	1111
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 118, 134, 287, 413, 512, 974, 1001, 1250
HpyF3I	CTNAG	2 cut(s)	625, 713
HpySE526I	ACGT	1 cut(s)	1111
Hsp92II	CATG	7 cut(s)	359, 445, 1040, 1055, 1219, 1271, 1325
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	1317
Kzo9I	GATC	3 cut(s)	592, 817, 853
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	307, 544, 910
Lsp1109I	GCAGC	7 cut(s)	22, 64, 96, 334, 1004, 1038, 1240
LweI	GCATC	6 cut(s)	7, 96, 210, 241, 242, 1353
MaeI	CTAG	3 cut(s)	893, 969, 1408
MaeII	ACGT	1 cut(s)	1111
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	594, 819, 855
MboI	GATC	3 cut(s)	592, 817, 853
MboII	GAAGA	3 cut(s)	86, 616, 1322
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	312, 788, 915
MlsI	TGGCCA	2 cut(s)	11, 365
MluCI	AATT	7 cut(s)	182, 464, 718, 792, 868, 1302, 1327
MluNI	TGGCCA	2 cut(s)	11, 365
MlyI	GAGTC	1 cut(s)	1395
MmeI	TCCRAC	1 cut(s)	713
Mox20I	TGGCCA	2 cut(s)	11, 365
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	2 cut(s)	11, 365
MseI	TTAA	2 cut(s)	1211, 1331
MslI	CAYNNNNRTG	1 cut(s)	1041
Msp20I	TGGCCA	2 cut(s)	11, 365
MspA1I	CMGCKG	1 cut(s)	1096
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	2 cut(s)	1082, 1083
Mva1269I	GAATGC	2 cut(s)	281, 1132
MwoI	GCNNNNNNNGC	9 cut(s)	17, 118, 134, 287, 413, 512, 974, 1001, 1250
NciI	CCSGG	2 cut(s)	1082, 1083
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	3 cut(s)	592, 817, 853
NlaIII	CATG	7 cut(s)	359, 445, 1040, 1055, 1219, 1271, 1325
NlaIV	GGNNCC	5 cut(s)	540, 887, 912, 1318, 1319
NmeAIII	GCCGAG	1 cut(s)	1003
NspI	RCATGY	2 cut(s)	1055, 1271
PaeR7I	CTCGAG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	2 cut(s)	281, 1132
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	1169, 1175
PflMI	CCANNNNNTGG	1 cut(s)	827
PkrI	GCNGC	7 cut(s)	37, 79, 111, 324, 994, 1028, 1255
PleI	GAGTC	1 cut(s)	1395
PmaCI	CACGTG	1 cut(s)	1112
PmlI	CACGTG	1 cut(s)	1112
PpsI	GAGTC	1 cut(s)	1395
Ppu21I	YACGTR	1 cut(s)	1112
PpuMI	RGGWCCY	1 cut(s)	1317
PshBI	ATTAAT	1 cut(s)	1211
PsiI	TTATAA	1 cut(s)	867
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	1317
PspCI	CACGTG	1 cut(s)	1112
PspN4I	GGNNCC	5 cut(s)	540, 887, 912, 1318, 1319
PspPI	GGNCC	1 cut(s)	1317
PspPPI	RGGWCCY	1 cut(s)	1317
PsrI	GAACNNNNNNTAC	2 cut(s)	693, 725
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	3 cut(s)	30, 431, 711
RsaNI	GTAC	3 cut(s)	29, 430, 710
RseI	CAYNNNNRTG	1 cut(s)	1041
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	1211, 1331
SatI	GCNGC	7 cut(s)	36, 78, 110, 323, 993, 1027, 1254
Sau3AI	GATC	3 cut(s)	592, 817, 853
Sau96I	GGNCC	1 cut(s)	1317
SchI	GAGTC	1 cut(s)	1395
ScrFI	CCNGG	2 cut(s)	1082, 1083
SduI	GDGCHC	3 cut(s)	312, 788, 915
SfaNI	GCATC	6 cut(s)	7, 96, 210, 241, 242, 1353
SfcI	CTRYAG	2 cut(s)	313, 750
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	1317
SlaI	CTCGAG	1 cut(s)	245
SmaI	CCCGGG	1 cut(s)	1083
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SmlI	CTYRAG	2 cut(s)	245, 659
SmoI	CTYRAG	2 cut(s)	245, 659
Sse9I	AATT	7 cut(s)	182, 464, 718, 792, 868, 1302, 1327
SsiI	CCGC	3 cut(s)	254, 1096, 1370
SspI	AATATT	3 cut(s)	60, 336, 946
SspMI	CTAG	3 cut(s)	893, 969, 1408
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	1080, 1081
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	3 cut(s)	274, 705, 751
TaiI	ACGT	1 cut(s)	1114
TaqI	TCGA	4 cut(s)	246, 595, 850, 1183
TasI	AATT	7 cut(s)	182, 464, 718, 792, 868, 1302, 1327
TfiI	GAWTC	2 cut(s)	1169, 1175
Tru1I	TTAA	2 cut(s)	1211, 1331
Tru9I	TTAA	2 cut(s)	1211, 1331
TscAI	CASTG	2 cut(s)	277, 439
TseI	GCWGC	7 cut(s)	35, 77, 109, 322, 992, 1026, 1253
TspDTI	ATGAA	6 cut(s)	344, 633, 647, 998, 1009, 1164
TspGWI	ACGGA	2 cut(s)	1308, 1346
TspMI	CCCGGG	1 cut(s)	1081
TspRI	CASTG	2 cut(s)	277, 439
Van91I	CCANNNNNTGG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	1317
VspI	ATTAAT	1 cut(s)	1211
XceI	RCATGY	2 cut(s)	1055, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1141
XhoI	CTCGAG	1 cut(s)	245
XmaI	CCCGGG	1 cut(s)	1081
XmaJI	CCTAGG	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	3 cut(s)	893, 969, 1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.