pycom01g18760

Ion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
17606712 .. 17607766
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18760.1

Sequence Viewer

Length: 300 bp
ATGCATGAGAGTTGGCTCACTTTGACTTGTATATTATCTGTACCTCATGCTGGTTATCTCCGGCATAGATTTGCAGAACTTGAGTTGAGCATTAAGGATTTTCTAATGGAGAAGAATCCATCATTGGTTCATTTTAGTGCTAAAAGAAGAACTCTTGCTTTAAAAAAAAAACATCTTGATTCTTTTTCCCAAATAAGGAGTCTCTCAAAACAGATTCATGAGGAACAAAGAGGAGGTTCCATTAAGAAGAGGATTGCATATATGGTTAATGTGTGTTTCTCCGTCTATCCATATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.56

Weight (kDa)

9.83

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029201)

Species Orthologous Gene IDs
pyrus_communis pycom01g18760 pycom02g13990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 50, 195
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw26I GTCTC 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 195
BseLI CCNNNNNNNGG 2 cut(s) 50, 195
BseRI GAGGAG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 50, 195
BsmAI GTCTC 1 cut(s) 206
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 206
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 1 cut(s) 41
CviAII CATG 3 cut(s) 5, 47, 218
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
CviQI GTAC 1 cut(s) 41
DraI TTTAAA 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 50, 221
FatI CATG 3 cut(s) 4, 46, 217
FauNDI CATATG 1 cut(s) 292
HapII CCGG 1 cut(s) 61
Hin1II CATG 3 cut(s) 8, 50, 221
HinfI GANTC 4 cut(s) 115, 179, 199, 214
HpaII CCGG 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 176, 218
HpyCH4V TGCA 3 cut(s) 4, 74, 257
Hsp92II CATG 3 cut(s) 8, 50, 221
LpnPI CCDG 2 cut(s) 36, 74
MboII GAAGA 3 cut(s) 124, 159, 259
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 5 cut(s) 54, 214, 224, 227, 243
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 93, 161, 243, 267
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 61
NdeI CATATG 1 cut(s) 292
NlaIII CATG 3 cut(s) 8, 50, 221
NlaIV GGNNCC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 217
PfeI GAWTC 3 cut(s) 115, 179, 214
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 238
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 4 cut(s) 93, 161, 243, 267
SchI GAGTC 1 cut(s) 208
SetI ASST 2 cut(s) 46, 238
SgeI CNNG 9 cut(s) 17, 39, 59, 63, 73, 92, 167, 188, 230
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
TfiI GAWTC 3 cut(s) 115, 179, 214
Tru1I TTAA 4 cut(s) 93, 161, 243, 267
Tru9I TTAA 4 cut(s) 93, 161, 243, 267
TspDTI ATGAA 2 cut(s) 119, 206
TspGWI ACGGA 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.