pycom02g13990

Ion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
10601118 .. 10602366
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13990.2

Sequence Viewer

Length: 486 bp
ATGCACTCGAAAACTTTTTATTATAATCAGAGCAAAAGGCAAAGCCGCAGCCAAAATCCAGCGGGCAGTAATGCTTGCAATGTAAGATGCAACTGCAAGCTCGCGTTTTCAAGTTTGCAGACTTTAGCAAGTGGGCACGTTTCTCGCATAAACAATGTTATCAGTATCCTTCTGTTGGGCATCGCACTTTTAGCATTGGAAGTTTGGAACCAACCGTATAAAATATCATCATTTTACTTCAGGCTCTCTTTCACTTGTATATTATCTGTACCTCATGTTGTTTATCTCCGGCAGAGATTTGCAGAACTTGAGAGCATTAAGGATTTTCTGATGGAGAAGAATTCATCATTGTTTCTTTTTAGTGATGAAAGAAGAACTCTTGCTTTGTATGTTGTGATCTTTTCGATTACTATACCATTTGAACACTACAAACATCTTGATTCTTTGGAAAGAAAAAAAAAACATCTTGATTTCTTTCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.76

Weight (kDa)

9.66

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029201)

Species Orthologous Gene IDs
pyrus_communis pycom01g18760 pycom02g13990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 46, 62
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 223
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 111, 422
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciVI GTATCC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 46, 49
BlsI GCNGC 2 cut(s) 47, 50
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 2 cut(s) 77, 189
BpuEI CTTGAG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 2 cut(s) 46, 62
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 85
BssMI GATC 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 64, 76, 98, 102
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 60
BsuI GTATCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 64, 76, 98, 102
Csp6I GTAC 1 cut(s) 269
CviAII CATG 1 cut(s) 275
CviJI RGCY 4 cut(s) 45, 51, 100, 244
CviKI_1 RGCY 4 cut(s) 45, 51, 100, 244
CviQI GTAC 1 cut(s) 269
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 340
FaeI CATG 1 cut(s) 278
FaiI YATR 7 cut(s) 24, 149, 219, 260, 276, 390, 413
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 46, 49
Fsp4HI GCNGC 2 cut(s) 46, 49
GluI GCNGC 2 cut(s) 46, 49
HapII CCGG 1 cut(s) 289
Hin1II CATG 1 cut(s) 278
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 30, 330
Hpy188III TCNNGA 2 cut(s) 437, 467
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 6 cut(s) 4, 78, 90, 96, 118, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 396
LpnPI CCDG 3 cut(s) 72, 226, 302
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 77, 189
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 2 cut(s) 349, 384
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 340
MnlI CCTC 1 cut(s) 282
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 396
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 2 cut(s) 47, 50
PsiI TTATAA 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 209
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 46, 49
Sau3AI GATC 1 cut(s) 396
SduI GDGCHC 1 cut(s) 138
SetI ASST 3 cut(s) 102, 141, 274
SfaNI GCATC 2 cut(s) 77, 189
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 340
SsiI CCGC 2 cut(s) 46, 62
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 8, 404
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 333, 381
XapI RAATTY 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.