pycom01g20390

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18813241 .. 18814286
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20390.2

Sequence Viewer

Length: 210 bp
ATGCCTTCGTCAGCCATCACCAGCCATCGTCAATGTTTAGAGTATGAGGCCTCATCCAAATCAAGTGCCTTTGCCGCTGCAACCAGTCAATCCTCCATTCATGCAAATTCTATGCAAAAAAGGTGGGAGTCTCTCCTGCGTCAAGGGAGGAGGATATTTGTTGTTGGTGATCTTATGCTCAACCAGATTTTGAGAAGAACTAGATTTTAA

Protein Analysis

70

Amino Acids

7.84

Weight (kDa)

11.23

Isoelectric Point (pI)

84.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029203)

Species Orthologous Gene IDs
pyrus_communis pycom01g20390 pycom04g05150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 10, 179
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 23, 33
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
Bse1I ACTGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 84
BssMI GATC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 53
CseI GACGC 1 cut(s) 128
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 1 cut(s) 101
CviJI RGCY 3 cut(s) 14, 24, 50
CviKI_1 RGCY 3 cut(s) 14, 24, 50
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 50
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 45, 102, 113, 176
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 75, 78
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 104
HinfI GANTC 1 cut(s) 128
HphI GGTGA 2 cut(s) 10, 179
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 80, 104, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 34, 97, 149, 197
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 201
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 207
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 5 cut(s) 40, 61, 103, 141, 144
MseI TTAA 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 104
PceI AGGCCT 1 cut(s) 50
PkrI GCNGC 2 cut(s) 76, 79
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 208
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 137
SetI ASST 1 cut(s) 125
SgeI CNNG 7 cut(s) 33, 75, 96, 113, 148, 155, 196
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 201
StuI AGGCCT 1 cut(s) 50
TasI AATT 1 cut(s) 106
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 89
XapI RAATTY 1 cut(s) 106
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.