pycom04g05150

pollen tube development

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
4879831 .. 4880899
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05150.2

Sequence Viewer

Length: 249 bp
ATGCGTTGTCGCCCCTCACGGCTCCATGCCTTCGTCAGCCATCACCAGCCATCGTCAATGTTTAGTCAGACAAATAAAGAGTCTGAGGCCTCATCCAAATCAAGTGCCTTTGCCCCTGCAACCAGTCAATCCTCCATTCATGCAAATTCTATGCAAAAAAGGTGGGAGTCTCTCCTGCGTCAAGGGAGGAGGATATTTGTTGTTGGTGATCTTATGCTCAACCAGATTTTGAGAAGAACTAGATTTTAA

Protein Analysis

83

Amino Acids

9.43

Weight (kDa)

11.83

Isoelectric Point (pI)

85.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029203)

Species Orthologous Gene IDs
pyrus_communis pycom01g20390 pycom04g05150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsuHPI GGTGA 2 cut(s) 35, 218
BccI CCATC 2 cut(s) 48, 58
BceAI ACGGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 123
BssMI GATC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 92
CseI GACGC 1 cut(s) 167
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 2 cut(s) 26, 140
CviJI RGCY 4 cut(s) 22, 39, 49, 89
CviKI_1 RGCY 4 cut(s) 22, 39, 49, 89
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 89
FaeI CATG 2 cut(s) 29, 143
FaiI YATR 4 cut(s) 27, 141, 152, 215
FatI CATG 2 cut(s) 25, 139
FokI GGATG 1 cut(s) 79
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 167
Hin1II CATG 2 cut(s) 29, 143
HinfI GANTC 2 cut(s) 80, 167
HphI GGTGA 2 cut(s) 35, 218
Hpy188I TCNGA 2 cut(s) 69, 85
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 119, 143, 154
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 29, 143
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 59, 129, 136, 188, 236
MaeI CTAG 1 cut(s) 240
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 246
MluCI AATT 1 cut(s) 145
MlyI GAGTC 2 cut(s) 89, 176
MnlI CCTC 6 cut(s) 25, 79, 100, 142, 180, 183
MseI TTAA 1 cut(s) 247
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 29, 143
NlaIV GGNNCC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 89
PleI GAGTC 2 cut(s) 88, 175
PpsI GAGTC 2 cut(s) 88, 175
PspN4I GGNNCC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 247
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 2 cut(s) 89, 176
SetI ASST 1 cut(s) 164
Sse9I AATT 1 cut(s) 145
SseBI AGGCCT 1 cut(s) 89
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 89
TasI AATT 1 cut(s) 145
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 128
XapI RAATTY 1 cut(s) 145
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.