Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0022275

Physical Location & Seq

Genomic Coordinates Forward (+)

19153634 .. 19155120

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGCAATTCATTCGGGTGCTCTGCCTCCGGCGAACGGCTGGTTTCGGCGGCGAGAGACGGCGATGTAGTCGAGGCCAAGATGCTCTTGGATTGCAATCCTTGCCTTGCCAAATACTCCACCTTCGGCGGCCTCAACTCCCCTCTCCATTTCGCCGCCGCTAAAGGCCACAACGAGATTGTTTCTTTGCTGCTGGAGAATGGAGCTGATGCCAATTCCAGGAATTACTGCGGGCAGACAGCATTGATGCAAGCATGCCGATATGGACACTGGGAAGTTGTACAGACCCTCATGCTCTTCAGATGCAATGTTGCAAGAGCAGACTATCTTACTGGCAGGACTGCTCTTCATTTTGCTGCTGTAAATGGGCATGTAAGATGTATAAGACTAGTTGTGGCTGACTTTGTTCCAAGTGCTCCTTATGAATCTCTGACCACTCAGACAGATAGCGACAGAGGTGATAGTGCAAATGCCGTGAACAAAAATGAGCAAAGGTATTGCTCTATCCAAACTTGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

174

Amino Acids

18.74

Weight (kDa)

6.93

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	16 - 98	1.2e-14	Ankyrin repeats (3 copies)
Ank	PF00023	46 - 75	2.1e-08	Ankyrin repeat
Ank_3	PF13606	46 - 72	8.4e-06	Ankyrin repeat
Ank_2	PF12796	49 - 132	6.4e-19	Ankyrin repeats (3 copies)
Ank_4	PF13637	49 - 97	7.6e-13	Ankyrin repeats (many copies)
Ank_5	PF13857	64 - 103	1.1e-08	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29140 FvH4_7g29140
pyrus_communis	pycom01g20840
rosa_samantha	Rh1CG390000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	50, 129, 156, 159, 231
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	36, 219
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	2 cut(s)	23, 418
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	3 cut(s)	75, 130, 166
ApeKI	GCWGC	2 cut(s)	190, 356
AsuHPI	GGTGA	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	23, 418
BbvI	GCAGC	2 cut(s)	177, 343
BceAI	ACGGC	3 cut(s)	53, 76, 458
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	6 cut(s)	51, 130, 156, 159, 191, 357
BlsI	GCNGC	6 cut(s)	52, 131, 157, 160, 192, 358
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	4 cut(s)	72, 199, 237, 293
BmuI	ACTGGG	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 219
Bse1I	ACTGG	2 cut(s)	275, 337
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	36, 219
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	275, 337
BseXI	GCAGC	2 cut(s)	177, 343
BshFI	GGCC	3 cut(s)	77, 132, 168
BsiHKAI	GWGCWC	2 cut(s)	23, 418
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	36, 219
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	77, 132, 168
Bsp1286I	GDGCHC	2 cut(s)	23, 418
Bsp1407I	TGTACA	1 cut(s)	280
BspACI	CCGC	5 cut(s)	50, 129, 156, 159, 231
BspANI	GGCC	3 cut(s)	77, 132, 168
BspCNI	CTCAG	1 cut(s)	451
BspQI	GCTCTTC	2 cut(s)	302, 351
BsrDI	GCAATG	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	275, 337
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	302, 351
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	233, 252, 256
BstDEI	CTNAG	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	2 cut(s)	258, 374
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	177, 343
BsuRI	GGCC	3 cut(s)	77, 132, 168
BtgZI	GCGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	233, 252, 256
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	255, 292, 371
CviJI	RGCY	6 cut(s)	40, 77, 132, 168, 206, 398
CviKI_1	RGCY	6 cut(s)	40, 77, 132, 168, 206, 398
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	302, 351
EarI	CTCTTC	2 cut(s)	302, 351
Eco57I	CTGAAG	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	3 cut(s)	258, 295, 374
FaiI	YATR	6 cut(s)	256, 264, 293, 372, 383, 423
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 403, 435
FatI	CATG	3 cut(s)	254, 291, 370
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	6 cut(s)	51, 130, 156, 159, 191, 357
Fsp4HI	GCNGC	6 cut(s)	51, 130, 156, 159, 191, 357
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	6 cut(s)	51, 130, 156, 159, 191, 357
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	77, 132, 168
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	3 cut(s)	258, 295, 374
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	302, 432, 441
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	5 cut(s)	96, 250, 306, 314, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	258, 295, 374
LguI	GCTCTTC	2 cut(s)	302, 351
LmnI	GCTCC	2 cut(s)	203, 421
LpnPI	CCDG	8 cut(s)	26, 43, 179, 205, 232, 256, 318, 322
Lsp1109I	GCAGC	2 cut(s)	177, 343
LweI	GCATC	4 cut(s)	72, 199, 237, 293
MaeI	CTAG	1 cut(s)	389
MboII	GAAGA	2 cut(s)	289, 338
MhlI	GDGCHC	2 cut(s)	23, 418
MluCI	AATT	3 cut(s)	7, 214, 223
MnlI	CCTC	6 cut(s)	37, 67, 143, 153, 299, 449
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	258, 295, 374
NspI	RCATGY	2 cut(s)	258, 374
PaeI	GCATGC	1 cut(s)	258
PciSI	GCTCTTC	2 cut(s)	302, 351
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	6 cut(s)	52, 131, 157, 160, 192, 358
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	16
SapI	GCTCTTC	2 cut(s)	302, 351
SatI	GCNGC	6 cut(s)	51, 130, 156, 159, 191, 357
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	23, 418
SetI	ASST	4 cut(s)	125, 208, 460, 497
SfaNI	GCATC	4 cut(s)	72, 199, 237, 293
SmiMI	CAYNNNNRTG	1 cut(s)	16
SpeI	ACTAGT	1 cut(s)	388
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	3 cut(s)	7, 214, 223
SsiI	CCGC	5 cut(s)	50, 129, 156, 159, 231
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	7, 214, 223
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	4 cut(s)	53, 132, 158, 161
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	2 cut(s)	190, 356
TspDTI	ATGAA	2 cut(s)	338, 438
TspRI	CASTG	1 cut(s)	275
XceI	RCATGY	2 cut(s)	258, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.