pycom01g22280

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
19949450 .. 19949940
491 bp
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UTR
Exon/CDS
Intron
pycom01g22280.2

Sequence Viewer

Length: 246 bp
ATGGGTGGTAGCAAATTAGCAATGTCGACTCTTGTAAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAGGACCCGCCTGCAGGGATTAGCGGGGCACCCCAGGATAACAATATAATGCTGTGGAAAGCTGTTATATTGGGTCTAATTTTGGGTGTATTTGTTAAGGCTGGTTCAATTGTAAGTAATATTTATGGCGTAGATTGGGAAAACAAACTTGAGGTATTAATTTTTCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.01

Weight (kDa)

10.11

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022399)

Species Orthologous Gene IDs
malus_domestica MD04G1160500.v1.1 MD11G1180400.v1.1
pyrus_communis pycom01g22280 pycom12g15390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 26
AciI CCGC 2 cut(s) 80, 96
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 61, 180
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 67
AseI ATTAAT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 78, 102
BmrFI CCNGG 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 103
BspACI CCGC 2 cut(s) 80, 96
BspLI GGNNCC 2 cut(s) 78, 102
BspMAI CTGCAG 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 76
CviJI RGCY 4 cut(s) 46, 67, 134, 173
CviKI_1 RGCY 4 cut(s) 46, 67, 134, 173
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 105
FaiI YATR 3 cut(s) 119, 140, 198
FauI CCCGC 2 cut(s) 87, 89
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 70, 86
LpnPI CCDG 6 cut(s) 59, 72, 92, 96, 119, 159
Lsp1109I GCAGC 1 cut(s) 54
MboII GAAGA 1 cut(s) 52
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 4 cut(s) 14, 150, 180, 231
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 3 cut(s) 36, 57, 217
MseI TTAA 2 cut(s) 168, 230
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 78, 102
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 78, 102
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PstI CTGCAG 1 cut(s) 88
SalI GTCGAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 168, 230
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 76
SbfI CCTGCAGG 1 cut(s) 88
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 107
SdaI CCTGCAGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 103
SetI ASST 2 cut(s) 136, 228
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse8387I CCTGCAGG 1 cut(s) 88
Sse9I AATT 4 cut(s) 14, 150, 180, 231
SsiI CCGC 2 cut(s) 80, 96
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 26
TasI AATT 4 cut(s) 14, 150, 180, 231
Tru1I TTAA 2 cut(s) 168, 230
Tru9I TTAA 2 cut(s) 168, 230
TseI GCWGC 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 76
VspI ATTAAT 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.