Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0022527

Physical Location & Seq

Genomic Coordinates Forward (+)

19954576 .. 19954901

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCTTTAGATGCCAATGGGAGGAGACTGTTGGTCACATCCGGTTCTGTAAGAGCACCCATATACCAGGTCCGGGGTCATGCGAATGGGTTGAGAACTCTCCCACACAGTGCTGCCATAACTACTGTAGATTGGCACCCGACATTATCCATCTCCTTAACAGGATCAGCTGATAACTCTGTCCGAGTGACATCTTTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

68

Amino Acids

7.07

Weight (kDa)

11.32

Isoelectric Point (pI)

17.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022527)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g22300 pycom01g22320 pycom01g22340 pycom07g25670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	172
AdeI	CACNNNGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	21, 73
AhdI	GACNNNNNGTC	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	68, 74
Bme18I	GGWCC	1 cut(s)	70
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	68, 74
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 73
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	21, 73
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	42, 73
BslI	CCNNNNNNNGG	2 cut(s)	21, 73
BsmAI	GTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	30, 110, 127
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 72
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	66
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	2 cut(s)	5, 170
CviKI_1	RGCY	2 cut(s)	5, 170
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
DraIII	CACNNNGTG	1 cut(s)	110
DrdI	GACNNNNNNGTC	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	83
FaiI	YATR	4 cut(s)	62, 64, 81, 119
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HapII	CCGG	2 cut(s)	42, 73
Hin1II	CATG	1 cut(s)	83
HpaII	CCGG	2 cut(s)	42, 73
Hpy188I	TCNGA	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	30, 110, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	53, 55, 80, 86, 147
Lsp1109I	GCAGC	1 cut(s)	100
MabI	ACCWGGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	34, 187
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	58
MnlI	CCTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	42, 73
MspR9I	CCNGG	2 cut(s)	68, 74
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	34, 187
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	68, 74
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	2 cut(s)	72, 172
SexAI	ACCWGGT	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	9 cut(s)	54, 79, 80, 85, 86, 92, 151, 174, 197
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	66, 72
TaaI	ACNGT	3 cut(s)	30, 110, 127
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	34, 187
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	34, 187
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.