Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0022527

Physical Location & Seq

Genomic Coordinates Forward (+)

19974693 .. 19975426

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGACAAGTATTTTCAGTTTGGGATATTTGCCTAACAGAACTGTTGTTGCGGTGTCAGGTGTTTGAATGGAGCTTGCAAAACCAAGGTCAAATCCTTTGGTCAAGGAACTGTAGCACTCTTGTCAAACAAAACTATTTCGCCATACACCTGATTAATTTGCGCTGCTCCCTTCCATTCCATAGGTTCCTTGACACCGAGAGCTCAAAAAATTGCAGACATGAAATGGCTTTAGATGCCAATGGGAGGAGACTGTTGGTCACATCCGGTTCTGTAAGAGCACCCATATGCCAGGTTGTTCTCTCTTCTCCATACGTGTGTCTGAGTGGCTTCGTTGTGTATAGCGTACGGGGTCATGCGAATGGGTTGAGAACTCTCCCAGACAGTGCTGCCAAAACTACAGTAGATTGGCACCCGACGTTACCCATCTTCTTAACAGGATCAGCTGATAACTCCGTCCGAGTAACATCTTTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

160

Amino Acids

17.9

Weight (kDa)

8.99

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022527)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g22300 pycom01g22320 pycom01g22340 pycom07g25670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	448
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	75, 204, 446
AluI	AGCT	3 cut(s)	75, 204, 446
Alw21I	GWGCWC	2 cut(s)	206, 283
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	165, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AseI	ATTAAT	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	206, 283
BbvI	GCAGC	2 cut(s)	152, 376
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	244
BfmI	CTRYAG	2 cut(s)	112, 399
BisI	GCNGC	2 cut(s)	166, 390
BlsI	GCNGC	2 cut(s)	167, 391
Bme1390I	CCNGG	1 cut(s)	293
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	188, 413
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	152, 376
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	206, 283
BsiSI	CCGG	1 cut(s)	267
BsiWI	CGTACG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	206, 283
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	188, 413
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	5 cut(s)	45, 113, 255, 386, 403
Bst6I	CTCTTC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	112, 399
BstV1I	GCAGC	2 cut(s)	152, 376
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	2 cut(s)	221, 356
CviJI	RGCY	5 cut(s)	75, 204, 230, 330, 446
CviKI_1	RGCY	5 cut(s)	75, 204, 230, 330, 446
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DriI	GACNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	224, 359
FaiI	YATR	9 cut(s)	146, 183, 222, 287, 289, 313, 342, 357, 478
FatI	CATG	2 cut(s)	220, 355
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	166, 390
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	166, 390
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	2 cut(s)	166, 390
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	224, 359
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	324, 461
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	5 cut(s)	45, 113, 255, 386, 403
HpyCH4IV	ACGT	2 cut(s)	315, 419
HpyCH4V	TGCA	2 cut(s)	79, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	315, 419
Hsp92II	CATG	2 cut(s)	224, 359
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	2 cut(s)	72, 173
LpnPI	CCDG	7 cut(s)	44, 164, 278, 280, 305, 393, 423
Lsp1109I	GCAGC	2 cut(s)	152, 376
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	2 cut(s)	315, 419
MaeIII	GTNAC	3 cut(s)	259, 420, 463
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	2 cut(s)	297, 421
MhlI	GDGCHC	2 cut(s)	206, 283
MluCI	AATT	2 cut(s)	157, 211
MnlI	CCTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	156, 434
MslI	CAYNNNNRTG	3 cut(s)	286, 316, 360
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	224, 359
NlaIV	GGNNCC	2 cut(s)	188, 413
NmuCI	GTSAC	1 cut(s)	259
Pfl23II	CGTACG	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	167, 391
Ppu21I	YACGTR	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspLI	CGTACG	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	188, 413
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	3 cut(s)	286, 316, 360
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	156, 434
SatI	GCNGC	2 cut(s)	166, 390
Sau3AI	GATC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	206, 283
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	112, 399
SmiMI	CAYNNNNRTG	3 cut(s)	286, 316, 360
Sse9I	AATT	2 cut(s)	157, 211
SsiI	CCGC	1 cut(s)	52
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	5 cut(s)	45, 113, 255, 386, 403
TaiI	ACGT	2 cut(s)	318, 422
TasI	AATT	2 cut(s)	157, 211
Tru1I	TTAA	2 cut(s)	156, 434
Tru9I	TTAA	2 cut(s)	156, 434
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	165, 389
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.