Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0029207

Physical Location & Seq

Genomic Coordinates Forward (+)

590256 .. 590941

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCAAACTTTTCGGAAAAGATGAACTTGAAGGAAACACAAGCCGGATTGTTGGAACATACGGCTATGTTCCTCCCGAATATGTAAAAAAGGGCATATACTCTATGAAGTACGATGTCTACAGCTTTGGAGTTCTACTTTTGCAAATGATTAGCGGACGGAAGAGTACATGTTACTATGGTCCGAACGAAAGTCAGCACCTCTTGGAATATGCATACACATCGTGGAAAGAGGATAAAGGACCGGAATTTATTGATCCATCACTTGACGATTCTTCTACTTCTTTGAAACTGTTGAGGTGCTTGCAAGTAGCTCTACTATGCGTCCAGGAAAATCCCGACGATAGGCCTACAATGTTGGAAGTCTATTCCATGCTCAAAACTGACACTCAAGCCGTTCCTATTCCTACAAAGACAGCTTTCTGTGGAAAAAGTGATGGAGATAAGGAAAGAGTATCTACATCACAGAAAGGAAACTGTTCAGTCAATGACGCTCAGATTTCCGAACTGCAACCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

174

Amino Acids

19.39

Weight (kDa)

5.26

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029207)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g01030
rosa_multiflora	Rmu_sc0005127.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	113, 169
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	32, 289
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	126, 314, 419
AluI	AGCT	3 cut(s)	126, 314, 419
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	3, 347
ApoI	RAATTY	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	182, 242
AvaII	GGWCC	2 cut(s)	182, 242
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	268, 431
BceAI	ACGGC	2 cut(s)	79, 380
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	182, 242
BmgT120I	GGNCC	2 cut(s)	182, 242
BmrFI	CCNGG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	5, 349
BsiSI	CCGG	2 cut(s)	46, 245
BslI	CCNNNNNNNGG	1 cut(s)	345
BsnI	GGCC	2 cut(s)	5, 349
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	5, 349
BspCNI	CTCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	251
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	294, 479
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	495
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	5, 349
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	182, 242
CseI	GACGC	2 cut(s)	313, 500
Csp6I	GTAC	2 cut(s)	112, 168
CviAII	CATG	2 cut(s)	171, 373
CviJI	RGCY	8 cut(s)	5, 45, 66, 126, 314, 349, 395, 419
CviKI_1	RGCY	8 cut(s)	5, 45, 66, 126, 314, 349, 395, 419
CviQI	GTAC	2 cut(s)	112, 168
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco147I	AGGCCT	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	182, 242
EcoRII	CCWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	2 cut(s)	174, 376
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	2 cut(s)	170, 372
FblI	GTMKAC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	5, 349
HapII	CCGG	2 cut(s)	46, 245
HgaI	GACGC	2 cut(s)	313, 500
Hin1II	CATG	2 cut(s)	174, 376
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	46, 245
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	17, 186, 498, 505
Hpy188III	TCNNGA	2 cut(s)	77, 338
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	294, 479
HpyCH4V	TGCA	4 cut(s)	145, 215, 307, 511
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	174, 376
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	59, 258, 314, 341
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	175, 267
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	34, 339
MnlI	CCTC	4 cut(s)	84, 212, 226, 291
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	46, 245
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	174, 376
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	349
PciI	ACATGT	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	327
PscI	ACATGT	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	182, 242
RsaI	GTAC	2 cut(s)	113, 169
RsaNI	GTAC	2 cut(s)	112, 168
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	182, 242
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	5 cut(s)	128, 204, 302, 316, 421
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	182, 242
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	248
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	294, 479
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	39, 122
TspGWI	ACGGA	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	182, 242
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.