Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005127.1

Orthogroup ID

OG0029207

Physical Location & Seq

Genomic Coordinates Reverse (-)

77762 .. 78466

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005127.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaatgctaagatttccgactttggaatggctaaacttttcaagaaagatgaagttgaaggaaacacaggccggattgttggaacatacggctatgttcctcctgaatatgtaaataaaggtatatactccatgaagtacgatgtctacagctttggagttctacttttgcaaatgctcagtggaaggaggagtacaagcttctacggtccaaacagtttgcaccttttggaatatgcatatgaatcatggagggaagacaaaggagtggaatttatcgatccagcactggatgattcttcttcttcctgtaaattgctgagatgcttgcaagtagctctactatgtgtacaggaaaaaccggatgataggcctacaatgttggaagtgtattcaatgctcaagtctgacactgaagtcatccctattcctacaaagacagctttctcagggaaaagagatgaacatatggcaagcacatccacatcacagcaagcagtatcagttaatgatgcacagatttccgagttgctaccccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

5.26

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029207)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g01030
rosa_multiflora	Rmu_sc0005127.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	3 cut(s)	140, 196, 351
AgsI	TTSAA	3 cut(s)	43, 59, 396
AluBI	AGCT	4 cut(s)	153, 201, 338, 443
AluI	AGCT	4 cut(s)	153, 201, 338, 443
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	2 cut(s)	70, 371
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
BbsI	GAAGAC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	314, 502
BpiI	GAAGAC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	279
BseGI	GGATG	4 cut(s)	298, 370, 420, 479
BseMII	CTCAG	3 cut(s)	193, 311, 462
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	72, 373
BshVI	ATCGAT	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	73, 362
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	72, 373
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	280
BspANI	GGCC	2 cut(s)	72, 373
BspCNI	CTCAG	3 cut(s)	192, 312, 461
BspDI	ATCGAT	1 cut(s)	279
BspPI	GGATC	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	209, 218
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	329, 475, 495
BstDEI	CTNAG	4 cut(s)	9, 179, 320, 448
BstF5I	GGATG	4 cut(s)	298, 370, 420, 479
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	72, 373
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	298, 370, 420, 479
BtsIMutI	CAGTG	3 cut(s)	187, 287, 411
Cac8I	GCNNGC	3 cut(s)	329, 475, 495
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	139, 195, 350
CviAII	CATG	2 cut(s)	133, 249
CviJI	RGCY	8 cut(s)	32, 72, 93, 153, 201, 338, 373, 443
CviKI_1	RGCY	8 cut(s)	32, 72, 93, 153, 201, 338, 373, 443
CviQI	GTAC	3 cut(s)	139, 195, 350
DdeI	CTNAG	4 cut(s)	9, 179, 320, 448
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eco147I	AGGCCT	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	136, 252
FatI	CATG	2 cut(s)	132, 248
FauNDI	CATATG	2 cut(s)	241, 468
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	4 cut(s)	305, 377, 407, 466
HaeIII	GGCC	2 cut(s)	72, 373
HapII	CCGG	2 cut(s)	73, 362
Hin1II	CATG	2 cut(s)	136, 252
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	245, 296
HpaII	CCGG	2 cut(s)	73, 362
Hpy166II	GTNNAC	2 cut(s)	148, 350
Hpy188I	TCNGA	3 cut(s)	19, 409, 526
Hpy188III	TCNNGA	2 cut(s)	43, 104
Hpy8I	GTNNAC	2 cut(s)	148, 350
HpyAV	CCTTC	2 cut(s)	53, 180
HpyCH4III	ACNGT	2 cut(s)	209, 218
HpyCH4V	TGCA	5 cut(s)	172, 223, 239, 331, 515
HpyF3I	CTNAG	4 cut(s)	9, 179, 320, 448
Hsp92II	CATG	2 cut(s)	136, 252
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	54, 86, 117, 275, 297, 322, 338, 375, 435
LweI	GCATC	2 cut(s)	314, 502
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	269, 291, 294, 297
MluCI	AATT	2 cut(s)	272, 314
MmeI	TCCRAC	3 cut(s)	42, 61, 363
MnlI	CCTC	3 cut(s)	111, 183, 246
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	1 cut(s)	507
MspI	CCGG	2 cut(s)	73, 362
Mva1269I	GAATGC	1 cut(s)	10
NdeI	CATATG	2 cut(s)	241, 468
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	136, 252
NsiI	ATGCAT	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	373
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	245, 296
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	3 cut(s)	140, 196, 351
RsaNI	GTAC	3 cut(s)	139, 195, 350
SaqAI	TTAA	1 cut(s)	507
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	209
SetI	ASST	6 cut(s)	124, 155, 203, 228, 340, 445
SfaNI	GCATC	2 cut(s)	314, 502
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	272, 314
SseBI	AGGCCT	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	209, 218
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	272, 314
TatI	WGTACW	2 cut(s)	194, 349
TfiI	GAWTC	2 cut(s)	245, 296
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	187, 294, 418
TspDTI	ATGAA	5 cut(s)	17, 66, 149, 258, 477
TspRI	CASTG	3 cut(s)	187, 294, 418
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.