pycom02g02610

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0024365
Physical Location & Seq
Forward (+)
1644257 .. 1644791
535 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGCAGCACCTCTTTGTCATCTCAAGCCTCAAAACCTACCTTCTCTTGATTCTGTTGCTGCCCAGAGGCAAAAATTTGTTGCTAAAGGCCTTGACGATCATGATCTCGTACCCCTAGGTAGTAATCAAACTCTCTTCGACACGTTTTGGGCACATACCATTGGCGAAACGCCCTGCCAATTTATCCGATACCGGCTCTACAATTTCACATCCACTGGTAACTCTGACCCGACTATAAACCAAGCATTCCTAGGCTCCTGGCACAGCTCCATGCTCATTGGCAGCCAATCCAAATTTGATATAAGCTTCTTTAAGAATGTGAAGGATGGAAAGGCAAATTTGGAGTCGGATCATAGGGTTTGGGGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

124

Amino Acids

13.73

Weight (kDa)

6.95

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 11 - 121 3.1e-14 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024365)

Species Orthologous Gene IDs
malus_domestica MD02G1031200.v1.1
pyrus_communis pycom02g02610
rosa_rugosa Rorug01G0483200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 3 cut(s) 74, 293, 337
AfaI GTAC 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 141
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 2 cut(s) 267, 306
AluI AGCT 2 cut(s) 267, 306
AlwI GGATC 1 cut(s) 357
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 5, 59, 282
ApoI RAATTY 3 cut(s) 74, 293, 337
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspA2I CCTAGG 2 cut(s) 115, 250
AvrII CCTAGG 2 cut(s) 115, 250
BaeGI GKGCMC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 17, 46, 294
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 259
BfaI CTAG 2 cut(s) 116, 251
BisI GCNGC 3 cut(s) 6, 60, 283
BlnI CCTAGG 2 cut(s) 115, 250
BlsI GCNGC 3 cut(s) 7, 61, 284
Bme1390I CCNGG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 115, 250
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 115, 250
BseGI GGATG 2 cut(s) 209, 331
BseJI GATNNNNATC 1 cut(s) 102
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 17, 46, 294
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 97, 103, 349
BspANI GGCC 1 cut(s) 90
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 192
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 115, 250
BssMI GATC 3 cut(s) 97, 103, 349
BssT1I CCWWGG 2 cut(s) 115, 250
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 209, 331
BstKTI GATC 3 cut(s) 100, 106, 352
BstMBI GATC 3 cut(s) 97, 103, 349
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 17, 46, 294
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 209, 331
BtsIMutI CAGTG 1 cut(s) 213
CciI TCATGA 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 192
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 101, 271
CviJI RGCY 7 cut(s) 28, 90, 196, 255, 267, 285, 306
CviKI_1 RGCY 7 cut(s) 28, 90, 196, 255, 267, 285, 306
CviQI GTAC 1 cut(s) 110
DpnI GATC 3 cut(s) 99, 105, 351
DpnII GATC 3 cut(s) 97, 103, 349
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 115, 250
Eco147I AGGCCT 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 2 cut(s) 115, 250
ErhI CCWWGG 2 cut(s) 115, 250
FaeI CATG 2 cut(s) 104, 274
FaiI YATR 6 cut(s) 102, 156, 236, 272, 302, 354
FatI CATG 2 cut(s) 100, 270
Fnu4HI GCNGC 3 cut(s) 6, 60, 283
FokI GGATG 2 cut(s) 196, 338
Fsp4HI GCNGC 3 cut(s) 6, 60, 283
FspBI CTAG 2 cut(s) 116, 251
GluI GCNGC 3 cut(s) 6, 60, 283
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 193
Hin1II CATG 2 cut(s) 104, 274
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 2 cut(s) 50, 344
HpaII CCGG 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 188, 226, 349
Hpy188III TCNNGA 2 cut(s) 47, 101
HpyAV CCTTC 2 cut(s) 51, 316
HpyCH4IV ACGT 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 2 cut(s) 104, 274
Kzo9I GATC 3 cut(s) 97, 103, 349
LmnI GCTCC 2 cut(s) 260, 272
LpnPI CCDG 6 cut(s) 77, 187, 201, 206, 244, 271
Lsp1109I GCAGC 3 cut(s) 17, 46, 294
MaeI CTAG 2 cut(s) 116, 251
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 99, 105, 351
MboI GATC 3 cut(s) 97, 103, 349
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 5 cut(s) 74, 179, 202, 293, 337
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 21, 39, 60
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 259
NdeII GATC 3 cut(s) 97, 103, 349
NlaIII CATG 2 cut(s) 104, 274
NlaIV GGNNCC 1 cut(s) 256
PagI TCATGA 1 cut(s) 100
PceI AGGCCT 1 cut(s) 90
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 7, 61, 284
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 256
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 6, 60, 283
Sau3AI GATC 3 cut(s) 97, 103, 349
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 13, 39, 43, 121, 146, 269, 308
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 74, 179, 202, 293, 337
SseBI AGGCCT 1 cut(s) 90
SspMI CTAG 2 cut(s) 116, 251
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 2 cut(s) 115, 250
TaiI ACGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 138
TasI AATT 5 cut(s) 74, 179, 202, 293, 337
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 220
TseI GCWGC 3 cut(s) 5, 59, 282
TspRI CASTG 1 cut(s) 220
XapI RAATTY 3 cut(s) 74, 293, 337
XmaJI CCTAGG 2 cut(s) 115, 250
XspI CTAG 2 cut(s) 116, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.