Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014179

Physical Location & Seq

Genomic Coordinates Reverse (-)

5827789 .. 5828718

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATGTCCATCATGAAGTTTCTAAGCGACAACAACGGCGTTCTCACCATCAACATCTACCCTTTCCTCAGCCTCCAAGCTGACCCCGATTTTCCGAAAGAATACGCCTTCTTCAACAACACTGCGAAGCCCGTTGTCGATGGCTCGATCTCCTACACCAACGTGCTTGATGCCAACTTCGACACCTGCATTGCCGCCCTCGAAAAGAACGGCTTCTCCAAATTGCCTGTCATTGTTGGAGAAGTCGGATGGCCAACGGATGGTGACCCTAATGCCAACATACAAGACGCCCGGCGGTTCAACCAAGGCCTTCTAAACCGAATCCTTGCGGGACAAGGCACCCCAAAGAGGTCAGCTGCGCCCGACATTTACATATTTGCACTCATAGATGAAGATGCCAAGAGCGTTCAGCCCGGGAATTTCGAGAGGCATTGGGGGATGTTCAATTACGACGGATCACTCAAATACCCGTTGGACATGGGTAGCGGAAAATCTTTGGTTCCGGCGAAAGGGGTGAAGTATTTGCCTAGACAATGGTGCGTAATGTCGCCGGACGCGAGCACTATCGATCCAAATTTGGCTCAAAGTGTCAACTATGCTTGCTCCCATGCAGATTGCACAAGTCTTGGAAATGGATCTTCTTGTGGAATGCTTGATGCTAAAAGCAATGCCTCTTATGCTTTCAACATGTACTTTCAAACAATGGACCAGCGCAACGATGCCTGCAACTTCTCCGGTCTTTCAGTCATTACAAAGATGGATCCAACTCCGACTCAGAATGGTTCGTGCCGGTTCGAGATCATGATTGATCTCGCAAAGTCTCGACCGCGGTCTCCTGCTTCGCCTTCTGCTGGATTGAGAGAGCACAGCTCCTACAAAGTTGTGATAGGGTTACTTGCGCTTGTTCTAGTGTCCACATTGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

310

Amino Acids

33.66

Weight (kDa)

5.64

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 159	3.2e-32	Glycosyl hydrolases family 17
X8	PF07983	178 - 247	2.6e-15	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20870
fragaria_vesca	FvH4_1g09660
malus_domestica	MD02G1105500.v1.1 MD15G1225400.v1.1
prunus_persica	Prupe.7G189600_v2.0.a1
pyrus_communis	pycom02g08350 pycom15g20020
rosa_chinensis	RchiOBHm_Chr2g0096501
rosa_laevigata	RLG00000016645
rosa_multiflora	Rmu_sc0004096.1_g000011
rosa_roxburghii	Rroxscaffold_2G00145590
rosa_rugosa	Rorug02G0058200.1
rosa_samantha	Rh2AG105200 Rh2BG107300 Rh2CG109100 Rh2DG108300
rosa_wichuraiana	Rw2G008130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	2 cut(s)	557, 829
AciI	CCGC	6 cut(s)	195, 295, 329, 486, 827, 829
AclWI	GGATC	5 cut(s)	463, 563, 643, 755, 768
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	418, 574
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	4 cut(s)	260, 348, 509, 851
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	5 cut(s)	115, 301, 445, 685, 698
AleI	CACNNNNGTG	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	80, 356, 870
AluI	AGCT	3 cut(s)	80, 356, 870
Alw21I	GWGCWC	2 cut(s)	563, 867
Alw26I	GTCTC	2 cut(s)	825, 837
AlwI	GGATC	5 cut(s)	463, 563, 643, 755, 768
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	251, 307
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	2 cut(s)	418, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	3 cut(s)	361, 714, 901
AspS9I	GGNCC	1 cut(s)	706
AsuC2I	CCSGG	3 cut(s)	292, 414, 415
AsuHPI	GGTGA	3 cut(s)	37, 275, 526
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	563, 867
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	6 cut(s)	17, 56, 134, 243, 254, 751
BceAI	ACGGC	2 cut(s)	52, 226
BclI	TGATCA	1 cut(s)	921
BcnI	CCSGG	3 cut(s)	292, 414, 415
BcoDI	GTCTC	2 cut(s)	825, 837
BfaI	CTAG	2 cut(s)	528, 908
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	195, 357
BlsI	GCNGC	2 cut(s)	196, 358
Bme1390I	CCNGG	3 cut(s)	292, 414, 415
Bme18I	GGWCC	1 cut(s)	706
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	3 cut(s)	340, 501, 762
BmrFI	CCNGG	3 cut(s)	292, 414, 415
BmsI	GCATC	4 cut(s)	160, 385, 646, 709
BoxI	GACNNNNGTC	1 cut(s)	829
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu10I	CCTNAGC	1 cut(s)	68
BpuMI	CCSGG	3 cut(s)	292, 414, 415
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	3 cut(s)	304, 413, 827
BsaWI	WCCGGW	1 cut(s)	734
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 348, 509, 851
Bse118I	RCCGGY	1 cut(s)	789
Bse3DI	GCAATG	2 cut(s)	189, 673
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	304, 413, 827
BseGI	GGATG	3 cut(s)	254, 265, 444
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	260, 348, 509, 851
BseMI	GCAATG	2 cut(s)	189, 673
BseMII	CTCAG	2 cut(s)	82, 788
BseXI	GCAGC	1 cut(s)	343
Bsh1236I	CGCG	2 cut(s)	557, 829
Bsh1285I	CGRYCG	1 cut(s)	827
BshFI	GGCC	2 cut(s)	253, 309
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	827
BsiHKAI	GWGCWC	2 cut(s)	563, 867
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	6 cut(s)	292, 414, 503, 551, 735, 790
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	260, 348, 509, 851
BsmAI	GTCTC	2 cut(s)	825, 837
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	2 cut(s)	253, 309
Bso31I	GGTCTC	1 cut(s)	837
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	563, 867
Bsp143I	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
BspACI	CCGC	6 cut(s)	195, 295, 329, 486, 827, 829
BspANI	GGCC	2 cut(s)	253, 309
BspCNI	CTCAG	2 cut(s)	81, 787
BspDI	ATCGAT	1 cut(s)	567
BspFNI	CGCG	2 cut(s)	557, 829
BspHI	TCATGA	2 cut(s)	12, 801
BspLI	GGNNCC	3 cut(s)	340, 501, 762
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	5 cut(s)	463, 563, 643, 755, 768
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	837
BsrDI	GCAATG	2 cut(s)	189, 673
BsrFI	RCCGGY	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	789
BssECI	CCNNGG	3 cut(s)	304, 413, 827
BssMI	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	559, 601, 724
BstDEI	CTNAG	3 cut(s)	23, 68, 774
BstDSI	CCRYGG	1 cut(s)	827
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	254, 265, 444
BstFNI	CGCG	2 cut(s)	557, 829
BstHHI	GCGC	3 cut(s)	361, 714, 901
BstKTI	GATC	8 cut(s)	150, 458, 571, 638, 763, 801, 811, 924
BstMAI	GTCTC	2 cut(s)	825, 837
BstMBI	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
BstMCI	CGRYCG	1 cut(s)	827
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	691
BstPAI	GACNNNNGTC	1 cut(s)	829
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	290, 412, 413
BstUI	CGCG	2 cut(s)	557, 829
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	635, 760
BstYI	RGATCY	2 cut(s)	635, 760
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	253, 309
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	827
BtsCI	GGATG	3 cut(s)	254, 265, 444
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	559, 601, 724
CciI	TCATGA	2 cut(s)	12, 801
CfoI	GCGC	3 cut(s)	361, 714, 901
Cfr10I	RCCGGY	1 cut(s)	789
Cfr13I	GGNCC	1 cut(s)	706
Cfr42I	CCGCGG	1 cut(s)	830
Cfr9I	CCCGGG	1 cut(s)	413
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	2 cut(s)	296, 563
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	5 cut(s)	13, 478, 608, 688, 802
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	3 cut(s)	23, 68, 774
DpnI	GATC	8 cut(s)	149, 457, 570, 637, 762, 800, 810, 923
DpnII	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
EaeI	YGGCCR	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	5 cut(s)	16, 481, 611, 691, 805
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	5 cut(s)	12, 477, 607, 687, 801
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	2 cut(s)	195, 357
FokI	GGATG	3 cut(s)	261, 272, 451
Fsp4HI	GCNGC	2 cut(s)	195, 357
FspBI	CTAG	2 cut(s)	528, 908
GlaI	GCGC	3 cut(s)	360, 713, 900
GluI	GCNGC	2 cut(s)	195, 357
HaeIII	GGCC	2 cut(s)	253, 309
HapII	CCGG	6 cut(s)	292, 414, 503, 551, 735, 790
HgaI	GACGC	2 cut(s)	296, 563
HhaI	GCGC	3 cut(s)	361, 714, 901
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	16, 481, 611, 691, 805
Hin6I	GCGC	3 cut(s)	359, 712, 899
HinP1I	GCGC	3 cut(s)	359, 712, 899
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	2 cut(s)	321, 772
HpaII	CCGG	6 cut(s)	292, 414, 503, 551, 735, 790
HphI	GGTGA	3 cut(s)	37, 275, 526
Hpy166II	GTNNAC	2 cut(s)	592, 915
Hpy188I	TCNGA	4 cut(s)	96, 248, 771, 777
Hpy188III	TCNNGA	5 cut(s)	13, 424, 796, 802, 822
Hpy8I	GTNNAC	2 cut(s)	592, 915
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	118, 320, 855
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	189, 380, 611, 618, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	3 cut(s)	23, 68, 774
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	16, 481, 611, 691, 805
HspAI	GCGC	3 cut(s)	359, 712, 899
Ksp22I	TGATCA	1 cut(s)	921
KspI	CCGCGG	1 cut(s)	830
Kzo9I	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
LmnI	GCTCC	2 cut(s)	608, 875
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	4 cut(s)	160, 385, 646, 709
MaeI	CTAG	2 cut(s)	528, 908
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	263, 891
MalI	GATC	8 cut(s)	149, 457, 570, 637, 762, 800, 810, 923
MboI	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
MboII	GAAGA	3 cut(s)	103, 404, 630
MflI	RGATCY	2 cut(s)	635, 760
MhlI	GDGCHC	2 cut(s)	563, 867
MlsI	TGGCCA	1 cut(s)	253
MluCI	AATT	4 cut(s)	221, 418, 445, 574
MluNI	TGGCCA	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	5 cut(s)	217, 226, 453, 788, 794
MnlI	CCTC	6 cut(s)	77, 83, 209, 342, 420, 682
Mox20I	TGGCCA	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	253
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	253
MspA1I	CMGCKG	2 cut(s)	356, 829
MspI	CCGG	6 cut(s)	292, 414, 503, 551, 735, 790
MspR9I	CCNGG	3 cut(s)	292, 414, 415
Mva1269I	GAATGC	1 cut(s)	654
MvnI	CGCG	2 cut(s)	557, 829
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	3 cut(s)	292, 414, 415
NdeII	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
NlaIII	CATG	5 cut(s)	16, 481, 611, 691, 805
NlaIV	GGNNCC	3 cut(s)	340, 501, 762
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	691
OliI	CACNNNNGTG	1 cut(s)	161
PagI	TCATGA	2 cut(s)	12, 801
PaqCI	CACCTGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	309
PciI	ACATGT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PctI	GAATGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	196, 358
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PscI	ACATGT	1 cut(s)	687
PshAI	GACNNNNGTC	1 cut(s)	829
PspEI	GGTNACC	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	340, 501, 762
PspPI	GGNCC	1 cut(s)	706
PsuI	RGATCY	2 cut(s)	635, 760
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	830
SatI	GCNGC	2 cut(s)	195, 357
Sau3AI	GATC	8 cut(s)	147, 455, 568, 635, 760, 798, 808, 921
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	3 cut(s)	292, 414, 415
SduI	GDGCHC	2 cut(s)	563, 867
SetI	ASST	6 cut(s)	82, 165, 188, 353, 358, 872
SfaNI	GCATC	4 cut(s)	160, 385, 646, 709
Sfr303I	CCGCGG	1 cut(s)	830
SgrBI	CCGCGG	1 cut(s)	830
SinI	GGWCC	1 cut(s)	706
SmaI	CCCGGG	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	221, 418, 445, 574
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	6 cut(s)	195, 295, 329, 486, 827, 829
SspMI	CTAG	2 cut(s)	528, 908
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	290, 412, 413
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	8 cut(s)	138, 146, 180, 201, 423, 567, 795, 823
TasI	AATT	4 cut(s)	221, 418, 445, 574
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	29, 405
TspGWI	ACGGA	2 cut(s)	272, 468
TspMI	CCCGGG	1 cut(s)	413
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	706
XapI	RAATTY	2 cut(s)	418, 574
XceI	RCATGY	1 cut(s)	691
XmaI	CCCGGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	528, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.