pycom02g12130

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
8704520 .. 8704741
222 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGATCTTTCTCACCATTTCCTTTATCTCTTCTCTGTCAACCACTTTCTTCGATGGAAGCACTTTCGATCTGACGGCAACACCAAGTTCCTCAGTCAACATTGTAGCGTTCATCCTTTGCTCCGCATGGAGTGGCCAAACGATCATCGGTACTTCATTGGTGATGCTCTCGAGGCTTGAGTTCCATCCACAGTGTGACCAAAATCCTCCTATTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

7.88

Weight (kDa)

4.05

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34139
pyrus_communis pycom02g12090 pycom02g12130
rosa_roxburghii Rroxscaffold_3G00231750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 133
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 4, 172
AvaI CYCGRG 1 cut(s) 169
BalI TGGCCA 1 cut(s) 135
BccI CCATC 3 cut(s) 47, 192, 209
BceAI ACGGC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 169
BmsI GCATC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 111, 184
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 169
Bsp143I GATC 3 cut(s) 3, 67, 141
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 104
BssMI GATC 3 cut(s) 3, 67, 141
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 111, 184
BstKTI GATC 3 cut(s) 6, 70, 144
BstMBI GATC 3 cut(s) 3, 67, 141
BstMWI GCNNNNNNNGC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 2 cut(s) 111, 184
BtsIMutI CAGTG 1 cut(s) 197
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 126
CviJI RGCY 2 cut(s) 135, 175
CviKI_1 RGCY 2 cut(s) 135, 175
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 91
DpnI GATC 3 cut(s) 5, 69, 143
DpnII GATC 3 cut(s) 3, 67, 141
DraIII CACNNNGTG 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 169
FaeI CATG 1 cut(s) 129
FaiI YATR 1 cut(s) 127
FatI CATG 1 cut(s) 125
FokI GGATG 2 cut(s) 98, 171
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 129
HincII GTYRAC 2 cut(s) 39, 97
HindII GTYRAC 2 cut(s) 39, 97
HphI GGTGA 2 cut(s) 4, 172
Hpy166II GTNNAC 2 cut(s) 39, 97
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 39, 97
HpyCH4III ACNGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 1 cut(s) 129
Kzo9I GATC 3 cut(s) 3, 67, 141
LmnI GCTCC 1 cut(s) 125
LweI GCATC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 194
MalI GATC 3 cut(s) 5, 69, 143
MboI GATC 3 cut(s) 3, 67, 141
MboII GAAGA 2 cut(s) 21, 40
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MnlI CCTC 3 cut(s) 100, 165, 216
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 3 cut(s) 3, 67, 141
NlaIII CATG 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 169
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 3, 67, 141
SfaNI GCATC 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 169
SgeI CNNG 5 cut(s) 96, 138, 181, 183, 188
SlaI CTCGAG 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 169, 176
SmoI CTYRAG 2 cut(s) 169, 176
SsiI CCGC 1 cut(s) 123
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 51, 66, 170
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 100, 144
TspRI CASTG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.