pycom02g12370

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
8927761 .. 8928090
330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12370.1

Sequence Viewer

Length: 330 bp
ATGGACGTAGCAACTAATCAATTAAGTCTGAAGAGTCACAGTATTAGTCCTAGTAGGTCCATAGACGCCCCACTAAACCCAACAAATGTTAGCTTTCAGACGATCTACCCGTGGCCCGAAGCAGACAGGTCGAAGCTGATCAGAAGTTTAAGCGTGGCTTGTTCAGCTTCTGGTTCCACTAATCATTTGCAGTACGAAAGTTTGGCTGCCAGAAAAAGATTCCTCGGAAGCTACCCGTTTTGCAAGAAAGAACCGACACCGTCCTTTGCGAAAAGAATCAAGAATGGTTCAAGAGCAACATGGACAAGGATAAGATCACTATTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.15

Weight (kDa)

10.35

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029094)

Species Orthologous Gene IDs
prunus_persica Prupe.7G147000_v2.0.a1
pyrus_communis pycom02g12370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 291
AluBI AGCT 4 cut(s) 93, 136, 167, 231
AluI AGCT 4 cut(s) 93, 136, 167, 231
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 57, 114
AvaII GGWCC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 57, 114
BmiI GGNNCC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 110, 223
BseDI CCNNGG 2 cut(s) 110, 223
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 115
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 102, 138, 314
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 110, 223
BssMI GATC 3 cut(s) 102, 138, 314
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 41, 261
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 110
BstKTI GATC 3 cut(s) 105, 141, 317
BstMBI GATC 3 cut(s) 102, 138, 314
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 57, 114
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 300
CviJI RGCY 7 cut(s) 93, 115, 136, 158, 167, 206, 231
CviKI_1 RGCY 7 cut(s) 93, 115, 136, 158, 167, 206, 231
CviQI GTAC 1 cut(s) 193
DpnI GATC 3 cut(s) 104, 140, 316
DpnII GATC 3 cut(s) 102, 138, 314
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 1 cut(s) 303
FaiI YATR 3 cut(s) 62, 301, 328
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FatI CATG 1 cut(s) 299
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 115
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 303
HinfI GANTC 3 cut(s) 34, 219, 276
Hpy188I TCNGA 4 cut(s) 30, 99, 143, 227
Hpy188III TCNNGA 2 cut(s) 280, 291
HpyCH4III ACNGT 2 cut(s) 41, 261
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 190, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 102, 138, 314
LpnPI CCDG 3 cut(s) 112, 156, 223
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 35
MalI GATC 3 cut(s) 104, 140, 316
MboI GATC 3 cut(s) 102, 138, 314
MboII GAAGA 1 cut(s) 43
MluCI AATT 1 cut(s) 20
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 1 cut(s) 233
MseI TTAA 2 cut(s) 23, 149
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 102, 138, 314
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 2 cut(s) 219, 276
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 57, 114
PstNI CAGNNNCTG 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 259
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 23, 149
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 102, 138, 314
Sau96I GGNCC 2 cut(s) 57, 114
SchI GAGTC 1 cut(s) 43
SetI ASST 7 cut(s) 9, 59, 95, 131, 138, 169, 233
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 57
Sse9I AATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 41, 261
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 219, 276
Tru1I TTAA 2 cut(s) 23, 149
Tru9I TTAA 2 cut(s) 23, 149
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 57
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.