pycom02g18280

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0024619
Physical Location & Seq
Forward (+)
16556146 .. 16556502
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18280.2

Sequence Viewer

Length: 306 bp
ATGGTTGCAAACAGCAATCATGATTTTGTTGAACAAATGTCGTTCCATTCTAAAACGACGTCTAAAGTACGTATCAGGGAATGCACTATTAGGAACAAAATAATCATCCAAAAGTTCCATACCTCGTCGTTGCCTGCTTCTATCAAGGTTTCCGGAACGGCTGGGCCTGCAGATCTGAGCCATAACTTGGACGACTCGACGGGAATCCTCTTCCCTCTCATTTTTTGCCCCCTGGTGATTGAACATTGCTTCTCATTGGTTAAACAATTCTTCCTCTTCCTGATCGAGTTCCCACATCATCCTTGA

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

7.83

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024619)

Species Orthologous Gene IDs
pyrus_communis pycom02g18280 pycom02g18360 pycom13g24550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 32, 242
AjnI CCWGG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 247
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 244
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 105, 298
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 172, 282
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 152
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 172, 282
BssNI GRCGYC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 215, 281
BstACI GRCGYC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 135, 168
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 105, 298
BstKTI GATC 2 cut(s) 175, 285
BstMBI GATC 2 cut(s) 172, 282
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 168
BstSNI TACGTA 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 105, 298
Cac8I GCNNGC 2 cut(s) 135, 168
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 161, 166, 180
CviKI_1 RGCY 3 cut(s) 161, 166, 180
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 174, 284
DpnII GATC 2 cut(s) 172, 282
Eam1104I CTCTTC 2 cut(s) 215, 281
EarI CTCTTC 2 cut(s) 215, 281
Eco105I TACGTA 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 120, 183
FatI CATG 1 cut(s) 19
FokI GGATG 2 cut(s) 92, 285
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 23
HinfI GANTC 2 cut(s) 194, 204
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 20, 153, 280
Hpy99I CGWCG 3 cut(s) 61, 130, 202
HpyCH4IV ACGT 2 cut(s) 59, 70
HpyCH4V TGCA 3 cut(s) 8, 84, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 59, 70
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 2 cut(s) 172, 282
LpnPI CCDG 8 cut(s) 61, 147, 147, 166, 180, 218, 245, 293
MaeII ACGT 2 cut(s) 59, 70
MalI GATC 2 cut(s) 174, 284
MboI GATC 2 cut(s) 172, 282
MboII GAAGA 3 cut(s) 202, 262, 268
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 266
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 4 cut(s) 133, 218, 225, 284
MroI TCCGGA 1 cut(s) 152
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 172, 282
NlaIII CATG 1 cut(s) 23
PagI TCATGA 1 cut(s) 19
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 187
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 2 cut(s) 172, 282
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 233
SetI ASST 4 cut(s) 62, 73, 125, 150
SfcI CTRYAG 1 cut(s) 168
SnaBI TACGTA 1 cut(s) 71
Sse9I AATT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 231
TaiI ACGT 2 cut(s) 62, 73
TaqI TCGA 2 cut(s) 197, 285
TasI AATT 1 cut(s) 266
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 187
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.