pycom13g24550

pectinesterase pectinesterase inhibitor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
21647277 .. 21647486
210 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24550.1

Sequence Viewer

Length: 210 bp
ATGGTTGCAAACAGCAATCATGATTTTGTTGAACAAATGTCGTTCCATTCTAAAACGACGTCTAAAGTACGTATCAGGGAATGCACTATTAGGAACAAAATAATCATCCAAGAGTTTCATACCTCGTCGTTGCCTGCTTCTATCAAGGTTTCCGGAACGGCTAGGCCTGCAGATCTGAGCCGCAGCTTGGATGACTCGACAGGAATGTGA

Protein Analysis

70

Amino Acids

7.68

Weight (kDa)

9.1

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024619)

Species Orthologous Gene IDs
pyrus_communis pycom02g18280 pycom02g18360 pycom13g24550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 174
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 181, 184
BlsI GCNGC 2 cut(s) 182, 185
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 152
BseGI GGATG 2 cut(s) 105, 196
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 152
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 172
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 135, 168
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 105, 196
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 168
BstSNI TACGTA 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 105, 196
Cac8I GCNNGC 2 cut(s) 135, 168
CciI TCATGA 1 cut(s) 19
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 20
CviJI RGCY 4 cut(s) 161, 166, 180, 186
CviKI_1 RGCY 4 cut(s) 161, 166, 180, 186
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 166
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 120
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 181, 184
FokI GGATG 2 cut(s) 92, 203
Fsp4HI GCNGC 2 cut(s) 181, 184
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 181, 184
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 20, 153
Hpy99I CGWCG 2 cut(s) 61, 130
HpyCH4IV ACGT 2 cut(s) 59, 70
HpyCH4V TGCA 3 cut(s) 8, 84, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 59, 70
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 61, 147, 166, 180, 186
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 59, 70
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MflI RGATCY 1 cut(s) 172
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 133
MroI TCCGGA 1 cut(s) 152
MspI CCGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 23
PagI TCATGA 1 cut(s) 19
PceI AGGCCT 1 cut(s) 166
PctI GAATGC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 182, 185
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 71
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SatI GCNGC 2 cut(s) 181, 184
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 188
SetI ASST 5 cut(s) 62, 73, 125, 150, 188
SfcI CTRYAG 1 cut(s) 168
SnaBI TACGTA 1 cut(s) 71
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 166
TaiI ACGT 2 cut(s) 62, 73
TaqI TCGA 1 cut(s) 197
TauI GCSGC 1 cut(s) 183
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 107
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.