pycom02g24910

disease resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
22993805 .. 22994910
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24910.1

Sequence Viewer

Length: 1011 bp
ATGGCTGAAGGCCTTTTGTCGCCCCAAAGAAAGCAAATGATGGAAGAAGTTGGAGTTGAGTACTTTGATGATTTAATATCAAGGTCATTTTTTGAGCATTCAGGGGACAACCAATCGCTTTTTACCATGCATGACCTGATAAATGATTTAGCGAAGTTTGTATCAGGAGAATTTTGTTGTAGGATGCGTGATAGTGGCTCGCTCAAGAACATTTCAAGCAAGACTCGTCATTTCTCTTATGCTGTGAATTTTGACTCCTTTGTCCAAGGACTTGGAGGCGTTCCTGCTACTGCAAAAGTGGACATTTCTGGTTTTGAAAAGTTTGAAGCTCTAAGCGAAGCCAAAGTGCTGTCTCTATCTCATTGTGACAACAAGGAGATGCCTAATTGGATTGGGAATTTGAAACATCTAAGGTATATAGACTTGTCATATGGTGGAGTTGAAAAGTTAGCTGAAACGATATGTACTTTGCATAATTTACAAACGTTGCTCTTGTCCAACTGTTATGCACTTGCTCAGTTGCCGATCAACTTGGCGAGGCTCATCAACTTGCATCATCTTGATGTTAGAAGCACTAAGGTAAAAGAGATTCCACCACATATGGATATGTTGAAGGATCTCCACACATTAAGTGACTTTGTCGTAGGCAAACAAACTGCATCTGACATTAAAGAGTTGAAAGAGCTTCAGATAGCAGGTACACTTTCTATTTCAGGGCTTCATAATATTGTGAATTCTGTGGATGCTTTTGAAGCCAATATGAGAGATAAGCACCTTAACGAACTAGCTTTGACATGGGGATCTGATACCGATGATTTACAGAAAGATATAGAGGTGCTGAGTTTTATGGTAATGACATTTCTGTTGCTAGGCCATTTAGATCTCATCAGTTTTATACTTCAAAGATATGTTGGGGTGGCAAGAGTGGTCTCATTTCGGAAATATCCAAGAAGACGGAGCTTTTCCTCATCTTTGTCAGCTTTATCTGGAAAATTGTCCCAAGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

337

Amino Acids

37.72

Weight (kDa)

6.23

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 51 4.8e-15 Disease resistance protein Winged helix domain
LRR_14 PF23598 110 - 237 3.3e-18 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 223 - 281 1.9e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024471)

Species Orthologous Gene IDs
malus_domestica MD07G1029300.v1.1
pyrus_communis pycom02g24910
rosa_rugosa Rorug01G0024500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 686
AclI AACGTT 1 cut(s) 485
AclWI GGATC 2 cut(s) 624, 808
AcsI RAATTY 4 cut(s) 170, 247, 397, 733
AcuI CTGAAG 2 cut(s) 27, 671
AfaI GTAC 3 cut(s) 62, 466, 700
AgsI TTSAA 9 cut(s) 216, 317, 326, 403, 443, 613, 679, 752, 902
AluBI AGCT 7 cut(s) 329, 452, 685, 788, 960, 980, 1004
AluI AGCT 7 cut(s) 329, 452, 685, 788, 960, 980, 1004
Alw26I GTCTC 2 cut(s) 357, 934
AlwI GGATC 2 cut(s) 624, 808
AoxI GGCC 2 cut(s) 10, 871
ApoI RAATTY 4 cut(s) 170, 247, 397, 733
BbsI GAAGAC 1 cut(s) 958
BccI CCATC 1 cut(s) 34
BcoDI GTCTC 2 cut(s) 357, 934
BfaI CTAG 2 cut(s) 785, 869
BfuAI ACCTGC 1 cut(s) 686
BglII AGATCT 1 cut(s) 880
BmcAI AGTACT 1 cut(s) 62
BmsI GCATC 5 cut(s) 174, 369, 562, 668, 733
BpiI GAAGAC 1 cut(s) 958
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 934
BsaJI CCNNGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 189, 748
BseMII CTCAG 2 cut(s) 530, 830
BshFI GGCC 2 cut(s) 12, 873
BslFI GGGAC 2 cut(s) 119, 982
BsmAI GTCTC 2 cut(s) 357, 934
BsmFI GGGAC 2 cut(s) 119, 982
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 12, 873
Bso31I GGTCTC 1 cut(s) 934
Bsp143I GATC 4 cut(s) 525, 616, 800, 880
BspANI GGCC 2 cut(s) 12, 873
BspCNI CTCAG 2 cut(s) 529, 831
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 2 cut(s) 624, 808
BspTNI GGTCTC 1 cut(s) 934
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 4 cut(s) 525, 616, 800, 880
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 5 cut(s) 332, 410, 516, 576, 839
BstF5I GGATG 2 cut(s) 189, 748
BstKTI GATC 4 cut(s) 528, 619, 803, 883
BstMAI GTCTC 2 cut(s) 357, 934
BstMBI GATC 4 cut(s) 525, 616, 800, 880
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 958
BstX2I RGATCY 3 cut(s) 616, 800, 880
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 3 cut(s) 616, 800, 880
BsuRI GGCC 2 cut(s) 12, 873
BtsCI GGATG 2 cut(s) 189, 748
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 1 cut(s) 200
Csp6I GTAC 3 cut(s) 61, 465, 699
CviAII CATG 3 cut(s) 127, 131, 795
CviQI GTAC 3 cut(s) 61, 465, 699
DdeI CTNAG 5 cut(s) 332, 410, 516, 576, 839
DpnI GATC 4 cut(s) 527, 618, 802, 882
DpnII GATC 4 cut(s) 525, 616, 800, 880
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 934
Eco57I CTGAAG 2 cut(s) 27, 671
EcoRI GAATTC 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 130, 134, 798
FaqI GGGAC 2 cut(s) 119, 982
FatI CATG 3 cut(s) 126, 130, 794
FauNDI CATATG 2 cut(s) 430, 600
FokI GGATG 2 cut(s) 196, 755
FspBI CTAG 2 cut(s) 785, 869
HaeIII GGCC 2 cut(s) 12, 873
Hin1II CATG 3 cut(s) 130, 134, 798
HinfI GANTC 3 cut(s) 223, 254, 589
Hpy166II GTNNAC 2 cut(s) 301, 701
Hpy188I TCNGA 4 cut(s) 664, 690, 805, 939
Hpy188III TCNNGA 4 cut(s) 165, 205, 560, 987
Hpy8I GTNNAC 2 cut(s) 301, 701
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 6 cut(s) 130, 293, 472, 509, 553, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 5 cut(s) 332, 410, 516, 576, 839
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 3 cut(s) 130, 134, 798
Kzo9I GATC 4 cut(s) 525, 616, 800, 880
LmnI GCTCC 1 cut(s) 957
LpnPI CCDG 8 cut(s) 87, 149, 150, 294, 297, 681, 699, 972
LweI GCATC 5 cut(s) 174, 369, 562, 668, 733
MaeI CTAG 2 cut(s) 785, 869
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 365, 632
MalI GATC 4 cut(s) 527, 618, 802, 882
MboI GATC 4 cut(s) 525, 616, 800, 880
MboII GAAGA 2 cut(s) 56, 963
MflI RGATCY 3 cut(s) 616, 800, 880
MluCI AATT 7 cut(s) 170, 247, 385, 397, 475, 733, 992
MlyI GAGTC 2 cut(s) 217, 248
MmeI TCCRAC 2 cut(s) 31, 522
MnlI CCTC 4 cut(s) 269, 531, 826, 976
Mph1103I ATGCAT 1 cut(s) 132
MseI TTAA 4 cut(s) 74, 629, 669, 777
MslI CAYNNNNRTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 752
NdeI CATATG 2 cut(s) 430, 600
NdeII GATC 4 cut(s) 525, 616, 800, 880
NlaIII CATG 3 cut(s) 130, 134, 798
NmuCI GTSAC 2 cut(s) 365, 632
NsiI ATGCAT 1 cut(s) 132
PceI AGGCCT 1 cut(s) 12
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 589
PflFI GACNNNGTC 1 cut(s) 638
PleI GAGTC 2 cut(s) 217, 248
PpsI GAGTC 2 cut(s) 217, 248
Psp1406I AACGTT 1 cut(s) 485
PsuI RGATCY 3 cut(s) 616, 800, 880
PsyI GACNNNGTC 1 cut(s) 638
RsaI GTAC 3 cut(s) 62, 466, 700
RsaNI GTAC 3 cut(s) 61, 465, 699
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 4 cut(s) 74, 629, 669, 777
Sau3AI GATC 4 cut(s) 525, 616, 800, 880
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 2 cut(s) 217, 248
SfaNI GCATC 5 cut(s) 174, 369, 562, 668, 733
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 7 cut(s) 170, 247, 385, 397, 475, 733, 992
SseBI AGGCCT 1 cut(s) 12
SspI AATATT 1 cut(s) 727
SspMI CTAG 2 cut(s) 785, 869
StuI AGGCCT 1 cut(s) 12
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 1 cut(s) 488
TasI AATT 7 cut(s) 170, 247, 385, 397, 475, 733, 992
TatI WGTACW 2 cut(s) 60, 464
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 4 cut(s) 74, 629, 669, 777
Tru9I TTAA 4 cut(s) 74, 629, 669, 777
TseFI GTSAC 2 cut(s) 365, 632
Tsp45I GTSAC 2 cut(s) 365, 632
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 970
Tth111I GACNNNGTC 1 cut(s) 638
XapI RAATTY 4 cut(s) 170, 247, 397, 733
XspI CTAG 2 cut(s) 785, 869
ZrmI AGTACT 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.