pycom02g25430

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
23359013 .. 23359772
760 bp
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UTR
Exon/CDS
Intron
pycom02g25430.1

Sequence Viewer

Length: 318 bp
ATGGAAAATGTGAACCGCTTGGGAGTGTTAATAAAAGAAAAGTACAATGAAATGGAAGATTTGAAGAAGCAAGAAGAAACTCGTCAACAAAGGATCTTAAAAGCAAAAGAGGATCTAGCTGCTGCTGAGCTAGAACTTGAAAATCTGACTCCTTATGAACCCCCTACAGATGAAATTGTAAGTTATGGATTCAGTCTTAAAATGTCAGGATCTACGGGCAGTCCCTGGTTAATGTGTCGGATCGAGTTCACGCTGACTTTAGGTGGTCATGTTCCTTATTACATATGGAATGTAATTACTGGTTTTGAACATGCTTAA
Functional Annotation

Protein Analysis

106

Amino Acids

12.1

Weight (kDa)

4.89

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029227)

Species Orthologous Gene IDs
pyrus_communis pycom02g25430
rosa_multiflora Rmu_co8312387.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 16
AclWI GGATC 4 cut(s) 101, 120, 217, 248
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 64, 140, 308
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 119, 130
AluI AGCT 2 cut(s) 119, 130
AlwI GGATC 4 cut(s) 101, 120, 217, 248
AlwNI CAGNNNCTG 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 119, 122
BbvI GCAGC 2 cut(s) 106, 109
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 116, 131
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 120, 123
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 121, 124
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 106, 109
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
Bsp143I GATC 4 cut(s) 93, 112, 209, 240
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 4 cut(s) 101, 120, 217, 248
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 4 cut(s) 93, 112, 209, 240
Bst2UI CCWGG 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 4 cut(s) 96, 115, 212, 243
BstMBI GATC 4 cut(s) 93, 112, 209, 240
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 106, 109
BstX2I RGATCY 3 cut(s) 93, 112, 209
BstYI RGATCY 3 cut(s) 93, 112, 209
CaiI CAGNNNCTG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 269, 311
CviJI RGCY 2 cut(s) 119, 130
CviKI_1 RGCY 2 cut(s) 119, 130
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 126
DpnI GATC 4 cut(s) 95, 114, 211, 242
DpnII GATC 4 cut(s) 93, 112, 209, 240
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 272, 314
FaiI YATR 6 cut(s) 156, 186, 270, 284, 286, 312
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 268, 310
FauNDI CATATG 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 120, 123
Fsp4HI GCNGC 2 cut(s) 120, 123
FspBI CTAG 2 cut(s) 116, 131
GluI GCNGC 2 cut(s) 120, 123
Hin1II CATG 2 cut(s) 272, 314
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HinfI GANTC 2 cut(s) 148, 189
Hpy166II GTNNAC 3 cut(s) 13, 86, 249
Hpy188I TCNGA 2 cut(s) 147, 240
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 3 cut(s) 13, 86, 249
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 2 cut(s) 272, 314
Kzo9I GATC 4 cut(s) 93, 112, 209, 240
LpnPI CCDG 4 cut(s) 192, 211, 238, 285
Lsp1109I GCAGC 2 cut(s) 106, 109
MaeI CTAG 2 cut(s) 116, 131
MalI GATC 4 cut(s) 95, 114, 211, 242
MboI GATC 4 cut(s) 93, 112, 209, 240
MboII GAAGA 3 cut(s) 68, 76, 86
MflI RGATCY 3 cut(s) 93, 112, 209
MluCI AATT 2 cut(s) 174, 294
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 1 cut(s) 103
MseI TTAA 5 cut(s) 29, 98, 198, 230, 316
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 284
NdeII GATC 4 cut(s) 93, 112, 209, 240
NlaIII CATG 2 cut(s) 272, 314
NspI RCATGY 1 cut(s) 314
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 121, 124
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 3 cut(s) 93, 112, 209
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 5 cut(s) 29, 98, 198, 230, 316
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 4 cut(s) 93, 112, 209, 240
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 226
SetI ASST 3 cut(s) 121, 132, 265
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 174, 294
SsiI CCGC 1 cut(s) 16
SspMI CTAG 2 cut(s) 116, 131
StyD4I CCNGG 1 cut(s) 224
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 174, 294
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 5 cut(s) 29, 98, 198, 230, 316
Tru9I TTAA 5 cut(s) 29, 98, 198, 230, 316
TseI GCWGC 2 cut(s) 119, 122
TspDTI ATGAA 3 cut(s) 63, 171, 186
XceI RCATGY 1 cut(s) 314
XspI CTAG 2 cut(s) 116, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.