Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0024483

Physical Location & Seq

Genomic Coordinates Forward (+)

24377038 .. 24382487

Gene Structure 5450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCGTCTCAGCTGCAGAAACCCAACTATGCTCTATCCTTTCCTCTCTTGCCAAAATCTTCTAGTAACCCTAATCATCTGATTAAGCATGGTAGCCCCTCCCTGATCATCATCCTTCCGCGCCACCATGTCCATCAAAATCGTAATAAGAAAAACTCCTCATCCTTGGTGATCCGTGCCACTTCTAGTGATCTCAGACCATCACCTGCATCAGTGTCCATAGTTACTTCAACAGAGAATAATGACTTTACGGTAAGGGCTGTGGTCACGGTGACGGTAACAGCTGGAGGGTTCCTCTCTAGCATAGGCTTGACTCGGCCCCTCGACGACTTTACCGACTTGCTCGGAGAAACCTTGCTTTTGGAGCTTGTTAGCGCCGAGCTTGACCCGAAGACGGGGTTGGAGAAGGAAACAGTGAAGGGGTACGCGCAGAAAGCGAGCCAAAAGGATGACGAGGTGCTGTATGAGACTACTTTCACCATCCCAGCAGAGTTTGGAGAGGTTGGGGCTGTTCAGGTAGAGAATGAACACCACAAGGAGATGTTCATCAAGAGCATCGACCTCGACGGCTTCCCGAATGGCACTGTTAATGTTCCCTGTAATTCCTGGGTTCATTCCAAATTTGACAACCCAGTGAAGAGAATTTTTTTCAGTAACAAGTCGTACATACCATCAGAGACACCAAGTGGGTTGAAGAAGCTAAGAGAATCGGAGCTGCAGAACTTGCAAGGAGATGGAGAGGGCCAAAGAAAAACATCTGATAGGATATACGATTATGACACTTATAATGACCTTGGCGATCCGGACAGCGAAGATCAACTGGCTAGGCCTGTCCTAGGCGGCAAAGATCACCCGTACCCAAGGCGCTGCAGAACTGGAAGACCACGCTCTAAAAAGGGTAATTATATAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

306

Amino Acids

33.87

Weight (kDa)

6.76

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	148 - 217	9.2e-13	PLAT/LH2 domain
Lipoxygenase	PF00305	230 - 300	1.4e-30	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024483)

Species	Orthologous Gene IDs
malus_domestica	MD07G1004600.v1.1
pyrus_communis	pycom02g26580
rosa_samantha	Rh1CG009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccII	CGCG	2 cut(s)	121, 428
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	2 cut(s)	119, 840
AclWI	GGATC	2 cut(s)	166, 794
AcsI	RAATTY	2 cut(s)	620, 642
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	425, 665, 857
AfiI	CCNNNNNNNGG	3 cut(s)	394, 395, 836
AgsI	TTSAA	2 cut(s)	231, 694
AjnI	CCWGG	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	6 cut(s)	13, 284, 367, 382, 700, 715
AluI	AGCT	6 cut(s)	13, 284, 367, 382, 700, 715
Alw26I	GTCTC	3 cut(s)	12, 461, 671
AlwI	GGATC	2 cut(s)	166, 794
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	3 cut(s)	317, 742, 827
ApeKI	GCWGC	3 cut(s)	13, 715, 867
ApoI	RAATTY	2 cut(s)	620, 642
AspA2I	CCTAGG	1 cut(s)	835
AspLEI	GCGC	4 cut(s)	123, 377, 430, 867
AspS9I	GGNCC	2 cut(s)	318, 742
AsuHPI	GGTGA	5 cut(s)	181, 195, 283, 469, 842
AvrII	CCTAGG	1 cut(s)	835
BbsI	GAAGAC	2 cut(s)	398, 886
BbvI	GCAGC	2 cut(s)	702, 854
BccI	CCATC	5 cut(s)	141, 208, 488, 679, 728
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	12, 461, 671
BfaI	CTAG	5 cut(s)	63, 186, 300, 825, 836
BfmI	CTRYAG	3 cut(s)	14, 716, 868
BfoI	RGCGCY	2 cut(s)	378, 868
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	4 cut(s)	14, 716, 841, 868
BlnI	CCTAGG	1 cut(s)	835
BlsI	GCNGC	4 cut(s)	15, 717, 842, 869
Bme1390I	CCNGG	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	318, 742
BmiI	GGNNCC	2 cut(s)	293, 320
BmrFI	CCNGG	1 cut(s)	607
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	218, 564
BmuI	ACTGGG	1 cut(s)	626
BpiI	GAAGAC	2 cut(s)	398, 886
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	306
BsaBI	GATNNNNATC	2 cut(s)	110, 545
BsaJI	CCNNGG	5 cut(s)	165, 606, 793, 835, 860
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 395, 836
Bse1I	ACTGG	3 cut(s)	632, 825, 880
Bse8I	GATNNNNATC	2 cut(s)	110, 545
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	5 cut(s)	165, 606, 793, 835, 860
BseGI	GGATG	4 cut(s)	111, 161, 454, 480
BseJI	GATNNNNATC	2 cut(s)	110, 545
BseLI	CCNNNNNNNGG	3 cut(s)	394, 395, 836
BseMII	CTCAG	2 cut(s)	23, 208
BseNI	ACTGG	3 cut(s)	632, 825, 880
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	702, 854
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	2 cut(s)	121, 428
BshFI	GGCC	3 cut(s)	319, 744, 829
BsiSI	CCGG	1 cut(s)	803
BslI	CCNNNNNNNGG	3 cut(s)	394, 395, 836
BsmAI	GTCTC	3 cut(s)	12, 461, 671
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	319, 744, 829
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
BspACI	CCGC	2 cut(s)	119, 840
BspANI	GGCC	3 cut(s)	319, 744, 829
BspCNI	CTCAG	2 cut(s)	22, 207
BspEI	TCCGGA	1 cut(s)	802
BspFNI	CGCG	2 cut(s)	121, 428
BspLI	GGNNCC	2 cut(s)	293, 320
BspMAI	CTGCAG	3 cut(s)	18, 720, 872
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	166, 794
BsrI	ACTGG	3 cut(s)	632, 825, 880
BssECI	CCNNGG	5 cut(s)	165, 606, 793, 835, 860
BssMI	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
BssT1I	CCWWGG	4 cut(s)	165, 793, 835, 860
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	5 cut(s)	253, 271, 277, 415, 586
Bst6I	CTCTTC	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	724
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	9, 194, 701
BstENI	CCTNNNNNAGG	1 cut(s)	834
BstF5I	GGATG	4 cut(s)	111, 161, 454, 480
BstFNI	CGCG	2 cut(s)	121, 428
BstH2I	RGCGCY	2 cut(s)	378, 868
BstHHI	GCGC	4 cut(s)	123, 377, 430, 867
BstKTI	GATC	6 cut(s)	108, 174, 193, 802, 817, 850
BstMAI	GTCTC	3 cut(s)	12, 461, 671
BstMBI	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 434, 724
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	605
BstSFI	CTRYAG	3 cut(s)	14, 716, 868
BstUI	CGCG	2 cut(s)	121, 428
BstV1I	GCAGC	2 cut(s)	702, 854
BstV2I	GAAGAC	2 cut(s)	398, 886
BsuRI	GGCC	3 cut(s)	319, 744, 829
BtsCI	GGATG	4 cut(s)	111, 161, 454, 480
BtsIMutI	CAGTG	4 cut(s)	219, 420, 582, 639
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	4 cut(s)	123, 377, 430, 867
Cfr13I	GGNCC	2 cut(s)	318, 742
Csp6I	GTAC	3 cut(s)	424, 664, 856
CviAII	CATG	2 cut(s)	89, 128
CviQI	GTAC	3 cut(s)	424, 664, 856
DdeI	CTNAG	3 cut(s)	9, 194, 701
DpnI	GATC	6 cut(s)	107, 173, 192, 801, 816, 849
DpnII	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
DraIII	CACNNNGTG	1 cut(s)	686
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco130I	CCWWGG	4 cut(s)	165, 793, 835, 860
Eco147I	AGGCCT	1 cut(s)	829
EcoNI	CCTNNNNNAGG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	4 cut(s)	165, 793, 835, 860
ErhI	CCWWGG	4 cut(s)	165, 793, 835, 860
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	92, 131
FatI	CATG	2 cut(s)	88, 127
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	14, 716, 841, 868
FokI	GGATG	4 cut(s)	98, 148, 461, 467
Fsp4HI	GCNGC	4 cut(s)	14, 716, 841, 868
FspBI	CTAG	5 cut(s)	63, 186, 300, 825, 836
GlaI	GCGC	4 cut(s)	122, 376, 429, 866
GluI	GCNGC	4 cut(s)	14, 716, 841, 868
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	2 cut(s)	378, 868
HaeIII	GGCC	3 cut(s)	319, 744, 829
HapII	CCGG	1 cut(s)	803
HhaI	GCGC	4 cut(s)	123, 377, 430, 867
Hin1II	CATG	2 cut(s)	92, 131
Hin6I	GCGC	4 cut(s)	121, 375, 428, 865
HinP1I	GCGC	4 cut(s)	121, 375, 428, 865
HinfI	GANTC	2 cut(s)	313, 707
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	5 cut(s)	181, 195, 283, 469, 842
Hpy188I	TCNGA	6 cut(s)	81, 197, 347, 676, 712, 760
Hpy188III	TCNNGA	3 cut(s)	550, 574, 803
Hpy99I	CGWCG	2 cut(s)	329, 569
HpyAV	CCTTC	3 cut(s)	125, 400, 412
HpyCH4III	ACNGT	5 cut(s)	253, 271, 277, 415, 586
HpyCH4V	TGCA	5 cut(s)	16, 209, 718, 727, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 434, 724
HpyF3I	CTNAG	3 cut(s)	9, 194, 701
Hsp92II	CATG	2 cut(s)	92, 131
HspAI	GCGC	4 cut(s)	121, 375, 428, 865
Kpn2I	TCCGGA	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
LmnI	GCTCC	2 cut(s)	364, 712
Lsp1109I	GCAGC	2 cut(s)	702, 854
LweI	GCATC	2 cut(s)	218, 564
MaeI	CTAG	5 cut(s)	63, 186, 300, 825, 836
MaeIII	GTNAC	6 cut(s)	65, 223, 265, 271, 277, 653
MalI	GATC	6 cut(s)	107, 173, 192, 801, 816, 849
MboI	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
MboII	GAAGA	6 cut(s)	51, 403, 649, 706, 824, 891
MluCI	AATT	4 cut(s)	601, 620, 642, 901
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	381
MroI	TCCGGA	1 cut(s)	802
MseI	TTAA	2 cut(s)	84, 588
MspA1I	CMGCKG	2 cut(s)	13, 284
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	2 cut(s)	121, 428
MwoI	GCNNNNNNNGC	3 cut(s)	364, 434, 724
NdeII	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
NlaIII	CATG	2 cut(s)	92, 131
NlaIV	GGNNCC	2 cut(s)	293, 320
NmeAIII	GCCGAG	2 cut(s)	295, 403
NmuCI	GTSAC	2 cut(s)	265, 271
PaqCI	CACCTGC	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	4 cut(s)	15, 717, 842, 869
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	293, 320
PspPI	GGNCC	2 cut(s)	318, 742
PstI	CTGCAG	3 cut(s)	18, 720, 872
PvuII	CAGCTG	2 cut(s)	13, 284
RsaI	GTAC	3 cut(s)	425, 665, 857
RsaNI	GTAC	3 cut(s)	424, 664, 856
SaqAI	TTAA	2 cut(s)	84, 588
SatI	GCNGC	4 cut(s)	14, 716, 841, 868
Sau3AI	GATC	6 cut(s)	105, 171, 190, 799, 814, 847
Sau96I	GGNCC	2 cut(s)	318, 742
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	218, 564
SfcI	CTRYAG	3 cut(s)	14, 716, 868
Sse9I	AATT	4 cut(s)	601, 620, 642, 901
SseBI	AGGCCT	1 cut(s)	829
SsiI	CCGC	2 cut(s)	119, 840
SspMI	CTAG	5 cut(s)	63, 186, 300, 825, 836
StuI	AGGCCT	1 cut(s)	829
StyD4I	CCNGG	1 cut(s)	605
StyI	CCWWGG	4 cut(s)	165, 793, 835, 860
TaaI	ACNGT	5 cut(s)	253, 271, 277, 415, 586
TaqI	TCGA	3 cut(s)	324, 558, 564
TasI	AATT	4 cut(s)	601, 620, 642, 901
TauI	GCSGC	1 cut(s)	843
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	2 cut(s)	84, 588
Tru9I	TTAA	2 cut(s)	84, 588
TscAI	CASTG	4 cut(s)	219, 420, 589, 639
TseFI	GTSAC	2 cut(s)	265, 271
TseI	GCWGC	3 cut(s)	13, 715, 867
Tsp45I	GTSAC	2 cut(s)	265, 271
TspDTI	ATGAA	3 cut(s)	535, 540, 602
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	4 cut(s)	219, 420, 589, 639
XagI	CCTNNNNNAGG	1 cut(s)	834
XapI	RAATTY	2 cut(s)	620, 642
XmaJI	CCTAGG	1 cut(s)	835
XspI	CTAG	5 cut(s)	63, 186, 300, 825, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.