pycom03g00520

Phosphatidylinositol N-acetylglucosaminyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
423081 .. 424037
957 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGGGCGAGTGGAAAAGGCATAGAATTTTGATGGTCTCTGATTTTTTCTATCCCAATTTTGGTGGGGTGGAGAATCACAGCTATTATCTCACACAATGCCTTCTCAAGCTTGGTCACAAAGTGGTCGTAATGACTCATGCCTACAACAATCGTTCTAGGGTGAGATATATGACAGGTGGTCTGAAAGTGTATTATGTACCATGGAAACCATTTCTCATGCAGAATACATTTCCCACCTTTTATGGGACACTTCCAATAGTGAGGACTATCCTTATTCGACAAAAAATATCACTGGTACACGGACATCAAGCTTTCTCAACTCTTTGCCATGGGGCTTTGATGCACTCACGCACAATGGGGTACAAAGTCGTATTTACTGATCATTCACTCTATGGTTTTGCTGATGTGGGAAGCATACACATGAACAAGGTATTGCAGTTTACTTTGGCAGAAGTAAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAAAACACATTGCTAAGGTCAGGTTTGCCACCAGAAAAAGGTCTTTGTAATACCTGTTGCTGTTGA

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

9.49

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 20 - 176 4.3e-22 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 21 - 176 7.7e-10 Glycosyl transferase 4-like domain
PIGA PF08288 46 - 135 5.9e-40 PIGA (GPI anchor biosynthesis)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024623)

Species Orthologous Gene IDs
pyrus_communis pycom03g00520
rosa_multiflora Rmu_sc0011792.1_g000002 Rmu_sc0038536.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 3 cut(s) 198, 297, 362
AfiI CCNNNNNNNGG 3 cut(s) 59, 243, 527
AhdI GACNNNNNGTC 1 cut(s) 177
AluBI AGCT 3 cut(s) 81, 109, 311
AluI AGCT 3 cut(s) 81, 109, 311
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 172
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 156
BmeRI GACNNNNNGTC 1 cut(s) 177
BmsI GCATC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 200, 328
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 243, 527
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 200, 328
BseLI CCNNNNNNNGG 3 cut(s) 59, 243, 527
BseMI GCAATG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 297
BshFI GGCC 1 cut(s) 464
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 59, 243, 527
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 2 cut(s) 200, 328
BspANI GGCC 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 497
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 200, 328
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 200, 328
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 2 cut(s) 200, 328
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 464
BtgI CCRYGG 2 cut(s) 200, 328
BtsIMutI CAGTG 1 cut(s) 290
Csp6I GTAC 3 cut(s) 197, 296, 361
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 5 cut(s) 137, 201, 217, 329, 421
CviJI RGCY 5 cut(s) 81, 109, 311, 335, 464
CviKI_1 RGCY 5 cut(s) 81, 109, 311, 335, 464
CviQI GTAC 3 cut(s) 197, 296, 361
DdeI CTNAG 1 cut(s) 503
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 200, 328
Eco31I GGTCTC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 200, 328
ErhI CCWWGG 2 cut(s) 200, 328
FaeI CATG 5 cut(s) 140, 204, 220, 332, 424
FaqI GGGAC 1 cut(s) 259
FatI CATG 5 cut(s) 136, 200, 216, 328, 420
FbaI TGATCA 1 cut(s) 379
FspBI CTAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 464
Hin1II CATG 5 cut(s) 140, 204, 220, 332, 424
HindIII AAGCTT 2 cut(s) 107, 309
HinfI GANTC 2 cut(s) 73, 133
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 298, 441
Hpy188I TCNGA 2 cut(s) 40, 183
Hpy8I GTNNAC 2 cut(s) 298, 441
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 220, 343, 436
HpyF3I CTNAG 1 cut(s) 503
Hsp92II CATG 5 cut(s) 140, 204, 220, 332, 424
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 159, 278, 446, 495, 534
LweI GCATC 1 cut(s) 330
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MluCI AATT 2 cut(s) 24, 55
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 419
NcoI CCATGG 2 cut(s) 200, 328
NdeII GATC 1 cut(s) 379
NlaIII CATG 5 cut(s) 140, 204, 220, 332, 424
NmuCI GTSAC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 73
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
RsaI GTAC 3 cut(s) 198, 297, 362
RsaNI GTAC 3 cut(s) 197, 296, 361
RseI CAYNNNNRTG 1 cut(s) 419
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 1 cut(s) 127
SfaNI GCATC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 24, 55
SspMI CTAG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 200, 328
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 24, 55
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 24
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.