Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011792.1

Orthogroup ID

OG0024623

Physical Location & Seq

Genomic Coordinates Reverse (-)

6881 .. 8326

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011792.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgggggagcggaaaaggcatagaattctcatggtttctgattttttctaccccaactttggtggtgtggagaatcacatctactatctttcacaatgccttctcaagcttggtcacaaggtggtggtaatgactcatgcataccagaatcgttctggagtgagatatatgacgggcggcctgaaagtgtattatgtaccatggcggccgtttcttatgcagaatacttttccaacattttacgggacacttccaattgtgaggactatccttattcgagagaatatatcgttggtacatgggcatcaagccttctcaactctttgccacgaggctttgatgcacgcacgcacaatgggttataaggttgtgtttacagatcattcgctctatggtttcgctgatgcgggaagcatacacatgaacaaggtcttgcagtttactttagcggaagtgagtcaggccatttgtgtttctcatacaagcaaggagaacactgtgctacggtcaggtttgccaccagaaaaggtgtttgtaatacctaatgctgttgacacagctatgttcaagcctgcaccaacgcgactgagtcgtcatgaaattgtcattgttgttataagtaggttggtttaccggaaaggtgcagatctgcttgttgaagttattccagaagtttgccgtttatatcccaataaatatgtggtaaggttcgtttcattgttggaggagatggacctaaacgtgtgcggttggaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

253

Amino Acids

29.02

Weight (kDa)

9.51

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024623)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00520
rosa_multiflora	Rmu_sc0011792.1_g000002 Rmu_sc0038536.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 617
AasI	GACNNNNNNGTC	1 cut(s)	591
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	583
AciI	CCGC	6 cut(s)	10, 177, 205, 407, 449, 747
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	198, 297
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	2 cut(s)	568, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	2 cut(s)	109, 560
AluI	AGCT	2 cut(s)	109, 560
AoxI	GGCC	3 cut(s)	178, 206, 462
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	329
BccI	CCATC	1 cut(s)	724
BceAI	ACGGC	2 cut(s)	193, 663
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	2 cut(s)	178, 206
BlsI	GCNGC	2 cut(s)	179, 207
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	733
BmsI	GCATC	3 cut(s)	313, 330, 394
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	740
BseX3I	CGGCCG	1 cut(s)	206
BsgI	GTGCAG	2 cut(s)	558, 663
Bsh1236I	CGCG	1 cut(s)	583
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	180, 208, 464
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	180, 208, 464
Bsp143I	GATC	2 cut(s)	379, 646
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	6 cut(s)	10, 177, 205, 407, 449, 747
BspANI	GGCC	3 cut(s)	180, 208, 464
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	379, 646
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	499, 507
Bst6I	CTCTTC	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	345, 349, 573
BstDEI	CTNAG	1 cut(s)	587
BstDSI	CCRYGG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	2 cut(s)	382, 649
BstMBI	GATC	2 cut(s)	379, 646
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstUI	CGCG	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	180, 208, 464
BtgI	CCRYGG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	345, 349, 573
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	197, 296
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	6 cut(s)	31, 137, 201, 299, 421, 596
CviJI	RGCY	8 cut(s)	109, 180, 208, 311, 335, 464, 560, 571
CviKI_1	RGCY	8 cut(s)	109, 180, 208, 311, 335, 464, 560, 571
CviQI	GTAC	2 cut(s)	197, 296
DdeI	CTNAG	1 cut(s)	587
DpnI	GATC	2 cut(s)	381, 648
DpnII	GATC	2 cut(s)	379, 646
DraIII	CACNNNGTG	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	206
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	733
Eco52I	CGGCCG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	6 cut(s)	34, 140, 204, 302, 424, 599
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	6 cut(s)	30, 136, 200, 298, 420, 595
FauI	CCCGC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	178, 206
Fsp4HI	GCNGC	2 cut(s)	178, 206
GluI	GCNGC	2 cut(s)	178, 206
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	180, 208, 464
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	6 cut(s)	34, 140, 204, 302, 424, 599
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	5 cut(s)	73, 133, 148, 457, 589
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	4 cut(s)	375, 441, 553, 631
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	156, 278, 596, 668
Hpy8I	GTNNAC	4 cut(s)	375, 441, 553, 631
HpyAV	CCTTC	2 cut(s)	110, 322
HpyCH4III	ACNGT	2 cut(s)	499, 507
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	140, 220, 343, 436, 575, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	587
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	6 cut(s)	34, 140, 204, 302, 424, 599
Kzo9I	GATC	2 cut(s)	379, 646
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	9 cut(s)	141, 158, 194, 446, 495, 534, 585, 647, 681
LweI	GCATC	3 cut(s)	313, 330, 394
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	381, 648
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	2 cut(s)	379, 646
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	646
MluCI	AATT	3 cut(s)	24, 255, 600
MlyI	GAGTC	3 cut(s)	127, 466, 598
MmeI	TCCRAC	3 cut(s)	257, 702, 731
MnlI	CCTC	3 cut(s)	255, 325, 718
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	419, 560
MspI	CCGG	1 cut(s)	634
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	379, 646
NlaIII	CATG	6 cut(s)	34, 140, 204, 302, 424, 599
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	142
PagI	TCATGA	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	73, 148
PflFI	GACNNNGTC	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	179, 207
PleI	GAGTC	3 cut(s)	127, 465, 597
PpsI	GAGTC	3 cut(s)	127, 465, 597
PsiI	TTATAA	2 cut(s)	363, 617
PspPI	GGNCC	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	588
RsaI	GTAC	2 cut(s)	198, 297
RsaNI	GTAC	2 cut(s)	197, 296
RseI	CAYNNNNRTG	2 cut(s)	419, 560
SatI	GCNGC	2 cut(s)	178, 206
Sau3AI	GATC	2 cut(s)	379, 646
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	3 cut(s)	127, 466, 598
SfaNI	GCATC	3 cut(s)	313, 330, 394
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	419, 560
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	24, 255, 600
SsiI	CCGC	6 cut(s)	10, 177, 205, 407, 449, 747
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	499, 507
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	1 cut(s)	277
TasI	AATT	3 cut(s)	24, 255, 600
TauI	GCSGC	2 cut(s)	180, 208
TfiI	GAWTC	2 cut(s)	73, 148
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	437, 612, 705
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	2 cut(s)	152, 697
XmnI	GAANNNNTTC	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.