Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038536.1

Orthogroup ID

OG0024623

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2489

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 856 bp

cctctcaaatttgatatgcgatttctcagatcaccccaagcctccgatccgatcaagctgctctgcaatttcacgcccaattgaaaatacaggaatgggggagcggaaaaggcatagaattctcatggtttctgattttttctaccccaactttggtggtgtggagaatcacatctactatctttcacaatgccttctcaagcttggtcacaaggtggtggtaatgactcatgcataccagaatcgttctggagtgagatatatgacaggcggcctgaaagtgtattatgtaccatggcggccgtttcttatgcagaatacttttccaacattttacgggacacttccaattgtgaggactatccttattcgagagaatatatcgttggtacatgggcatcaagccttctcaactctttgccacgaggctttgatgcacgcacgcacaatgggttataaggttgtgtttacagatcattcgctctatggtttcgctgatgcgggaagcatacacatgaacaaggtcttgcagtttactttagcggaagtgagtcaggccatttgtgtttctcatacaagcaaggagaacactgtgctacggtcaggtttgccaccagaaaaggtgtttgtaatacctaatgctgttgacacagctatgttcaagcctgcaccaacgcgactgagtcgtcatgaaattgtcattgttgttataagtaggttggtttaccggaaaggtgcagatctgcttgttgaagttattccagaagtttgccgtttatatcccaataaatatgtggtaaggttcgtttcattgttggaggagatggacctaaacgtgtgcggttggaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

284

Amino Acids

32.36

Weight (kDa)

9.38

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024623)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00520
rosa_multiflora	Rmu_sc0011792.1_g000002 Rmu_sc0038536.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	457, 711
AasI	GACNNNNNNGTC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	677
AciI	CCGC	6 cut(s)	104, 271, 299, 501, 543, 841
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	8, 118
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	292, 391
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	3 cut(s)	84, 662, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	58, 203, 654
AluI	AGCT	3 cut(s)	58, 203, 654
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	3 cut(s)	272, 300, 556
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	8, 118
Asp700I	GAANNNNTTC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	827
AsuHPI	GGTGA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	827
BauI	CACGAG	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	2 cut(s)	287, 757
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	3 cut(s)	59, 272, 300
BlsI	GCNGC	3 cut(s)	60, 273, 301
Bme18I	GGWCC	1 cut(s)	827
BmgT120I	GGNCC	1 cut(s)	827
BmsI	GCATC	3 cut(s)	407, 424, 488
BpmI	CTGGAG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	40, 672
BseRI	GAGGAG	1 cut(s)	834
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	2 cut(s)	652, 757
Bsh1236I	CGCG	1 cut(s)	677
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	274, 302, 558
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	274, 302, 558
Bsp143I	GATC	5 cut(s)	29, 46, 51, 473, 740
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	6 cut(s)	104, 271, 299, 501, 543, 841
BspANI	GGCC	3 cut(s)	274, 302, 558
BspCNI	CTCAG	2 cut(s)	39, 673
BspFNI	CGCG	1 cut(s)	677
BspHI	TCATGA	1 cut(s)	689
BspPI	GGATC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	5 cut(s)	29, 46, 51, 473, 740
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	593, 601
Bst6I	CTCTTC	1 cut(s)	843
BstC8I	GCNNGC	3 cut(s)	439, 443, 667
BstDEI	CTNAG	2 cut(s)	26, 681
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	677
BstKTI	GATC	5 cut(s)	32, 49, 54, 476, 743
BstMBI	GATC	5 cut(s)	29, 46, 51, 473, 740
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	274, 302, 558
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	3 cut(s)	439, 443, 667
CciI	TCATGA	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	291, 390
CspCI	CAANNNNNGTGG	2 cut(s)	137, 172
CviAII	CATG	6 cut(s)	125, 231, 295, 393, 515, 690
CviQI	GTAC	2 cut(s)	291, 390
DdeI	CTNAG	2 cut(s)	26, 681
DpnI	GATC	5 cut(s)	31, 48, 53, 475, 742
DpnII	GATC	5 cut(s)	29, 46, 51, 473, 740
DraIII	CACNNNGTG	1 cut(s)	215
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	827
Eco52I	CGGCCG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	6 cut(s)	128, 234, 298, 396, 518, 693
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	6 cut(s)	124, 230, 294, 392, 514, 689
FauI	CCCGC	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	59, 272, 300
Fsp4HI	GCNGC	3 cut(s)	59, 272, 300
GluI	GCNGC	3 cut(s)	59, 272, 300
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	274, 302, 558
HapII	CCGG	1 cut(s)	728
Hin1II	CATG	6 cut(s)	128, 234, 298, 396, 518, 693
HincII	GTYRAC	1 cut(s)	647
HindII	GTYRAC	1 cut(s)	647
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	5 cut(s)	167, 227, 242, 551, 683
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	4 cut(s)	469, 535, 647, 725
Hpy188I	TCNGA	4 cut(s)	29, 46, 51, 134
Hpy188III	TCNNGA	4 cut(s)	250, 372, 690, 762
Hpy8I	GTNNAC	4 cut(s)	469, 535, 647, 725
HpyAV	CCTTC	2 cut(s)	204, 416
HpyCH4III	ACNGT	2 cut(s)	593, 601
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	7 cut(s)	66, 234, 314, 437, 530, 669, 738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	26, 681
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	6 cut(s)	128, 234, 298, 396, 518, 693
Kzo9I	GATC	5 cut(s)	29, 46, 51, 473, 740
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	3 cut(s)	407, 424, 488
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	5 cut(s)	31, 48, 53, 475, 742
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	5 cut(s)	29, 46, 51, 473, 740
MfeI	CAATTG	2 cut(s)	79, 349
MflI	RGATCY	1 cut(s)	740
MluCI	AATT	6 cut(s)	8, 67, 79, 118, 349, 694
MlyI	GAGTC	3 cut(s)	221, 560, 692
MmeI	TCCRAC	3 cut(s)	351, 796, 825
MnlI	CCTC	5 cut(s)	12, 52, 349, 419, 812
Mph1103I	ATGCAT	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	757
MslI	CAYNNNNRTG	2 cut(s)	513, 654
MspI	CCGG	1 cut(s)	728
MunI	CAATTG	2 cut(s)	79, 349
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	5 cut(s)	29, 46, 51, 473, 740
NlaIII	CATG	6 cut(s)	128, 234, 298, 396, 518, 693
NmuCI	GTSAC	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	236
PagI	TCATGA	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	757
PfeI	GAWTC	2 cut(s)	167, 242
PflFI	GACNNNGTC	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	60, 273, 301
PleI	GAGTC	3 cut(s)	221, 559, 691
PpsI	GAGTC	3 cut(s)	221, 559, 691
PsiI	TTATAA	2 cut(s)	457, 711
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	740
PsyI	GACNNNGTC	1 cut(s)	682
RsaI	GTAC	2 cut(s)	292, 391
RsaNI	GTAC	2 cut(s)	291, 390
RseI	CAYNNNNRTG	2 cut(s)	513, 654
SatI	GCNGC	3 cut(s)	59, 272, 300
Sau3AI	GATC	5 cut(s)	29, 46, 51, 473, 740
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	3 cut(s)	221, 560, 692
SfaNI	GCATC	3 cut(s)	407, 424, 488
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	2 cut(s)	513, 654
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	8, 67, 79, 118, 349, 694
SsiI	CCGC	6 cut(s)	104, 271, 299, 501, 543, 841
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	593, 601
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	1 cut(s)	371
TasI	AATT	6 cut(s)	8, 67, 79, 118, 349, 694
TauI	GCSGC	2 cut(s)	274, 302
TfiI	GAWTC	2 cut(s)	167, 242
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	531, 706, 799
TspRI	CASTG	1 cut(s)	596
Tth111I	GACNNNGTC	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	2 cut(s)	8, 118
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 791
XmnI	GAANNNNTTC	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.