Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029231

Physical Location & Seq

Genomic Coordinates Forward (+)

3502217 .. 3503279

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTACGTGTCAAGCCACCTCTGCCAAATTCCAGTCAAGTTTCCCACTTCTGCAACTCCCCAAAATGCCCCTCAAATATAAGACTAATTACTTCCTCCTCCAACTCTTTGCTTTTCTCCTGTTGGTTTGGTTCTGGTGAAAGGAAGGAGATGATGGGCTCTGAGAACCGGGGCTCCGACGAAGCCCACCTCCACGCGCCGAAAGAAGAAATGGAAAATCTCGTCCTCGACGATCAATCGAACGGCAATAAATCGTACTTGAATTATCGCAGCGCCATGTCGTCGCTCTCCGATACGATACACCCTCTCTCGTCGTTGCCGTCCTCCTCCCAGATCGTATCCGAAGTCCCCGCCACCACCGCCAATACAACGCCACCTGCCGACGCCGATCCCCTGTTCGTTCCCGCACCGTACCGCGACCTCCGAAACCCTAGCTCGGCCCCGGACAACACCACTTACATCGACCCGCCTTCTTACGCCGACGTGATCTACAGCCCCTACGATGCCGAAACCGCCGCCGAAATCCACGGCATCGAGAGTCCTGGTAAGAGCTCCGACAACTCGAGCTCGTACTCTCTCTCGCGATCTCCGTCTTCCACATCCGAGTACATCAAAATCACGGTCTCGAATCCGCAGAAGGAGCCGGAAAGCGGGAATTCGATCGTTCCGGGAGCTAACAATTACGTCACGTACCTGATCACGACTCGGACGAACATTCCGGATTTCGGCGGATCGGAATTCGGAGTCCGGCGGCGGTTTCGGGACGTGGTAACGTTATCAGACCGGTTGGCGGAGTCGTACAGAGGGTTCTTTATACCGCCGAGGCCAGACAAGAGCGTGGTGGAGAGTCAGGTGATGCAGAAACAGGAGTTTGTGGAGCAGAGAAGAGTGGCATTGGAGAAGTACTTGAGGCGATTGGCTTCGCACCAGATCGATCAAGAGAAGCGACGAATTGAAGGTGTTTTTGCAGGTGCAGGGGAAGCTACCCCTGACATTGACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

335

Amino Acids

36.87

Weight (kDa)

5.47

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	242 - 311	3.3e-13	PX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029231)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g04490
rosa_multiflora	Rmu_co8338331.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	385, 959
Acc36I	ACCTGC	2 cut(s)	385, 959
AccII	CGCG	3 cut(s)	197, 417, 583
AccIII	TCCGGA	1 cut(s)	718
AclI	AACGTT	1 cut(s)	773
AclWI	GGATC	2 cut(s)	383, 739
AcsI	RAATTY	3 cut(s)	28, 655, 737
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	7 cut(s)	257, 413, 572, 608, 692, 800, 905
AfiI	CCNNNNNNNGG	4 cut(s)	436, 650, 725, 790
AflIII	ACRYGT	1 cut(s)	7
AgeI	ACCGGT	1 cut(s)	783
AgsI	TTSAA	2 cut(s)	262, 956
AjiI	CACGTC	2 cut(s)	484, 766
AjnI	CCWGG	1 cut(s)	541
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	5 cut(s)	435, 552, 567, 674, 983
AluI	AGCT	5 cut(s)	435, 552, 567, 674, 983
Alw21I	GWGCWC	2 cut(s)	554, 569
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	383, 739
Ama87I	CYCGRG	1 cut(s)	562
Aor13HI	TCCGGA	1 cut(s)	718
AoxI	GGCC	2 cut(s)	438, 824
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	3 cut(s)	28, 655, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
AsiGI	ACCGGT	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	199, 275
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	3 cut(s)	170, 443, 669
AsuHPI	GGTGA	2 cut(s)	149, 865
AvaI	CYCGRG	1 cut(s)	562
BanII	GRGCYC	4 cut(s)	161, 176, 554, 569
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	554, 569
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	3 cut(s)	259, 304, 544
BciT130I	CCWGG	1 cut(s)	543
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	3 cut(s)	170, 443, 669
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	2 cut(s)	385, 959
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	271, 516, 752
BlsI	GCNGC	3 cut(s)	272, 517, 753
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	4 cut(s)	170, 443, 543, 669
BmeT110I	CYCGRG	1 cut(s)	562
BmgBI	CACGTC	2 cut(s)	484, 766
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	175, 441, 642
BmrFI	CCNGG	4 cut(s)	170, 443, 543, 669
BmsI	GCATC	3 cut(s)	493, 540, 846
BpiI	GAAGAC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	928
BpuMI	CCSGG	3 cut(s)	170, 443, 669
Bsa29I	ATCGAT	1 cut(s)	933
BsaAI	YACGTR	2 cut(s)	8, 690
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	4 cut(s)	169, 441, 526, 821
BsaWI	WCCGGW	2 cut(s)	718, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 650, 725, 790
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	718
BseBI	CCWGG	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	933
BseDI	CCNNGG	4 cut(s)	169, 441, 526, 821
BseGI	GGATG	1 cut(s)	599
BseLI	CCNNNNNNNGG	4 cut(s)	436, 650, 725, 790
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	88, 316
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	3 cut(s)	197, 417, 583
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	2 cut(s)	440, 826
BshTI	ACCGGT	1 cut(s)	783
BshVI	ATCGAT	1 cut(s)	933
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	554, 569
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	7 cut(s)	169, 443, 644, 668, 719, 748, 784
BslFI	GGGAC	2 cut(s)	332, 776
BslI	CCNNNNNNNGG	4 cut(s)	436, 650, 725, 790
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	332, 776
BsnI	GGCC	2 cut(s)	440, 826
Bso31I	GGTCTC	1 cut(s)	628
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	4 cut(s)	161, 176, 554, 569
Bsp13I	TCCGGA	1 cut(s)	718
Bsp68I	TCGCGA	1 cut(s)	583
BspANI	GGCC	2 cut(s)	440, 826
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	933
BspEI	TCCGGA	1 cut(s)	718
BspFNI	CGCG	3 cut(s)	197, 417, 583
BspLI	GGNNCC	3 cut(s)	175, 441, 642
BspMI	ACCTGC	2 cut(s)	385, 959
BspPI	GGATC	2 cut(s)	383, 739
BspTNI	GGTCTC	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	783
BssECI	CCNNGG	4 cut(s)	169, 441, 526, 821
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	411, 622
Bst6I	CTCTTC	1 cut(s)	880
BstACI	GRCGYC	1 cut(s)	384
BstBAI	YACGTR	2 cut(s)	8, 690
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	599
BstFNI	CGCG	3 cut(s)	197, 417, 583
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	199, 275
BstMAI	GTCTC	1 cut(s)	628
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 359, 512, 640, 980
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	4 cut(s)	168, 441, 541, 667
BstSFI	CTRYAG	1 cut(s)	490
BstUI	CGCG	3 cut(s)	197, 417, 583
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	585
Bsu15I	ATCGAT	1 cut(s)	933
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	440, 826
BsuTUI	ATCGAT	1 cut(s)	933
BtgI	CCRYGG	1 cut(s)	526
BtrI	CACGTC	2 cut(s)	484, 766
BtsCI	GGATG	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	1000
BtuMI	TCGCGA	1 cut(s)	583
BveI	ACCTGC	2 cut(s)	385, 959
CfoI	GCGC	2 cut(s)	199, 275
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	933
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	7 cut(s)	256, 412, 571, 607, 691, 799, 904
CspAI	ACCGGT	1 cut(s)	783
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	7 cut(s)	256, 412, 571, 607, 691, 799, 904
DdeI	CTNAG	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
EciI	GGCGGA	2 cut(s)	744, 806
Ecl136II	GAGCTC	2 cut(s)	552, 567
Eco24I	GRGCYC	4 cut(s)	161, 176, 554, 569
Eco31I	GGTCTC	1 cut(s)	628
Eco53kI	GAGCTC	2 cut(s)	552, 567
Eco88I	CYCGRG	1 cut(s)	562
EcoICRI	GAGCTC	2 cut(s)	552, 567
EcoRI	GAATTC	2 cut(s)	655, 737
EcoRII	CCWGG	1 cut(s)	541
EcoT38I	GRGCYC	4 cut(s)	161, 176, 554, 569
FaeI	CATG	1 cut(s)	280
FaiI	YATR	3 cut(s)	80, 278, 815
FaqI	GGGAC	2 cut(s)	332, 776
FatI	CATG	1 cut(s)	276
FauI	CCCGC	4 cut(s)	358, 412, 474, 644
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	3 cut(s)	271, 516, 752
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	4 cut(s)	161, 176, 554, 569
Fsp4HI	GCNGC	3 cut(s)	271, 516, 752
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	2 cut(s)	198, 274
GluI	GCNGC	3 cut(s)	271, 516, 752
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	440, 826
HapII	CCGG	7 cut(s)	169, 443, 644, 668, 719, 748, 784
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	2 cut(s)	199, 275
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	197, 273
HinP1I	GCGC	2 cut(s)	197, 273
HinfI	GANTC	6 cut(s)	538, 628, 703, 744, 794, 847
HpaII	CCGG	7 cut(s)	169, 443, 644, 668, 719, 748, 784
HphI	GGTGA	2 cut(s)	149, 865
Hpy188III	TCNNGA	7 cut(s)	535, 582, 625, 700, 719, 761, 938
Hpy99I	CGWCG	7 cut(s)	182, 233, 286, 316, 386, 485, 951
HpyAV	CCTTC	4 cut(s)	139, 480, 631, 950
HpyCH4III	ACNGT	2 cut(s)	411, 622
HpyCH4IV	ACGT	6 cut(s)	7, 483, 684, 689, 765, 773
HpyCH4V	TGCA	4 cut(s)	54, 859, 968, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 359, 512, 640, 980
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	6 cut(s)	7, 483, 684, 689, 765, 773
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	197, 273
Kpn2I	TCCGGA	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	696
LmnI	GCTCC	5 cut(s)	179, 557, 640, 671, 877
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	3 cut(s)	493, 540, 846
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	6 cut(s)	7, 483, 684, 689, 765, 773
MaeIII	GTNAC	3 cut(s)	3, 685, 769
MboII	GAAGA	3 cut(s)	218, 585, 897
MhlI	GDGCHC	4 cut(s)	161, 176, 554, 569
MluCI	AATT	7 cut(s)	28, 87, 262, 655, 679, 737, 951
MlyI	GAGTC	5 cut(s)	547, 697, 753, 803, 856
MmeI	TCCRAC	3 cut(s)	126, 201, 579
MroI	TCCGGA	1 cut(s)	718
MspI	CCGG	7 cut(s)	169, 443, 644, 668, 719, 748, 784
MspR9I	CCNGG	4 cut(s)	170, 443, 543, 669
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	3 cut(s)	197, 417, 583
MwoI	GCNNNNNNNGC	5 cut(s)	22, 359, 512, 640, 980
NciI	CCSGG	3 cut(s)	170, 443, 669
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	3 cut(s)	175, 441, 642
NmeAIII	GCCGAG	2 cut(s)	416, 846
NmuCI	GTSAC	1 cut(s)	685
NruI	TCGCGA	1 cut(s)	583
PaeR7I	CTCGAG	1 cut(s)	562
PaqCI	CACCTGC	2 cut(s)	385, 959
PcsI	WCGNNNNNNNCGW	4 cut(s)	228, 317, 587, 707
PfeI	GAWTC	1 cut(s)	628
PfoI	TCCNGGA	1 cut(s)	667
PinAI	ACCGGT	1 cut(s)	783
PkrI	GCNGC	3 cut(s)	272, 517, 753
Ple19I	CGATCG	1 cut(s)	663
PleI	GAGTC	5 cut(s)	546, 697, 752, 802, 855
PpsI	GAGTC	5 cut(s)	546, 697, 752, 802, 855
Ppu21I	YACGTR	2 cut(s)	8, 690
Psp124BI	GAGCTC	2 cut(s)	554, 569
Psp1406I	AACGTT	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	175, 441, 642
PspPI	GGNCC	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	562
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PvuI	CGATCG	1 cut(s)	663
RruI	TCGCGA	1 cut(s)	583
RsaI	GTAC	7 cut(s)	257, 413, 572, 608, 692, 800, 905
RsaNI	GTAC	7 cut(s)	256, 412, 571, 607, 691, 799, 904
SacI	GAGCTC	2 cut(s)	554, 569
SatI	GCNGC	3 cut(s)	271, 516, 752
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	5 cut(s)	547, 697, 753, 803, 856
ScrFI	CCNGG	4 cut(s)	170, 443, 543, 669
SduI	GDGCHC	4 cut(s)	161, 176, 554, 569
SfaNI	GCATC	3 cut(s)	493, 540, 846
SfcI	CTRYAG	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	562
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	562, 907
SmoI	CTYRAG	2 cut(s)	562, 907
Sse9I	AATT	7 cut(s)	28, 87, 262, 655, 679, 737, 951
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	2 cut(s)	554, 569
StyD4I	CCNGG	4 cut(s)	168, 441, 541, 667
TaaI	ACNGT	2 cut(s)	411, 622
TaiI	ACGT	6 cut(s)	10, 486, 687, 692, 768, 776
TaqI	TCGA	8 cut(s)	228, 239, 462, 534, 563, 626, 659, 933
TasI	AATT	7 cut(s)	28, 87, 262, 655, 679, 737, 951
TatI	WGTACW	2 cut(s)	606, 903
TauI	GCSGC	2 cut(s)	518, 754
TfiI	GAWTC	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	685
TspGWI	ACGGA	1 cut(s)	579
XapI	RAATTY	3 cut(s)	28, 655, 737
XhoI	CTCGAG	1 cut(s)	562
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.