Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338331.1

Orthogroup ID

OG0029231

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 999

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 754 bp

ctggtggtataaccatgatgggctctgagaaccaccaggaccatcactacggtggttcgaaagaagagatggagagtctcgtcctcgacgacccgctgccgttgaacaacggcggcgccagtaaatcgtcgtattcgaattaccgcagcgccatgtcgtcgctttccgacacgcaccacccgctctcgtctataatcgtctccacgaccccggccccggccgaatccgatccgcttctgactgcgccaccgccgttccgcgatctccgaaaccctaacggcgccgacagctccgcgtacgtcgacccgccctcttacggcgacgtggttttcagtccgttggatggcgagacgatcggcgaaatcaacggcgtcgagagcccgagcaagagctccgaccattccagctcttattcgctttcgcgatcttcgtcgtccagctccgactatatcaaaatcacggtttcgaatcctcagaaggagcaggagtccacgaattcagttattcccggagggaatacttacgtcacgtatctgatcacgacgaggacgaacattccggagttcggcggctcggaatttggcgtccggcggcggtttcgggacattgtgacgttatcggaccggctggcggaggcgtacagaggcttcttcattccgccgcggccggataagaacgtggtggagagccaggtgatgcagaaacaagagtttgtggagcagaggagagtggcattggagaagtacttgaggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

251

Amino Acids

27.51

Weight (kDa)

5.28

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029231)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g04490
rosa_multiflora	Rmu_co8338331.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 280
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	302
AccII	CGCG	4 cut(s)	260, 295, 423, 663
AccIII	TCCGGA	1 cut(s)	558
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	2 cut(s)	218, 664
AcsI	RAATTY	2 cut(s)	495, 577
AcyI	GRCGYC	4 cut(s)	116, 281, 371, 584
AfaI	GTAC	3 cut(s)	298, 640, 745
AfiI	CCNNNNNNNGG	5 cut(s)	216, 316, 343, 565, 630
AgsI	TTSAA	1 cut(s)	105
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	2 cut(s)	35, 689
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	4 cut(s)	290, 392, 407, 440
AluI	AGCT	4 cut(s)	290, 392, 407, 440
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	3 cut(s)	82, 204, 343
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	3 cut(s)	212, 218, 664
ApeKI	GCWGC	2 cut(s)	96, 146
ApoI	RAATTY	2 cut(s)	495, 577
AspLEI	GCGC	4 cut(s)	118, 151, 246, 283
AspS9I	GGNCC	3 cut(s)	39, 213, 621
AsuC2I	CCSGG	3 cut(s)	211, 217, 509
AsuHPI	GGTGA	1 cut(s)	705
AsuII	TTCGAA	3 cut(s)	58, 136, 466
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	39, 621
BanI	GGYRCC	2 cut(s)	115, 280
BanII	GRGCYC	3 cut(s)	25, 382, 394
BarI	GAAGNNNNNNTAC	2 cut(s)	631, 663
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	83, 158
BccI	CCATC	4 cut(s)	12, 50, 63, 337
BceAI	ACGGC	6 cut(s)	84, 126, 237, 294, 333, 384
BciT130I	CCWGG	2 cut(s)	37, 691
BclI	TGATCA	1 cut(s)	536
BcnI	CCSGG	3 cut(s)	211, 217, 509
BcoDI	GTCTC	3 cut(s)	82, 204, 343
BfoI	RGCGCY	3 cut(s)	119, 152, 284
BisI	GCNGC	7 cut(s)	97, 114, 147, 570, 592, 661, 664
BlsI	GCNGC	7 cut(s)	98, 115, 148, 571, 593, 662, 665
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	5 cut(s)	37, 211, 217, 509, 691
Bme18I	GGWCC	2 cut(s)	39, 621
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	39, 213, 621
BmiI	GGNNCC	3 cut(s)	117, 215, 282
BmrFI	CCNGG	5 cut(s)	37, 211, 217, 509, 691
BmsI	GCATC	1 cut(s)	686
Bpu14I	TTCGAA	3 cut(s)	58, 136, 466
BpuMI	CCSGG	3 cut(s)	211, 217, 509
BsaAI	YACGTR	1 cut(s)	530
BsaHI	GRCGYC	4 cut(s)	116, 281, 371, 584
BsaJI	CCNNGG	3 cut(s)	209, 215, 661
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 316, 343, 565, 630
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	119
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	37, 691
BseDI	CCNNGG	3 cut(s)	209, 215, 661
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	5 cut(s)	216, 316, 343, 565, 630
BseMII	CTCAG	2 cut(s)	17, 487
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	738
BseX3I	CGGCCG	2 cut(s)	218, 664
BseXI	GCAGC	2 cut(s)	83, 158
Bsh1236I	CGCG	4 cut(s)	260, 295, 423, 663
Bsh1285I	CGRYCG	3 cut(s)	221, 356, 667
BshFI	GGCC	3 cut(s)	214, 220, 666
BshNI	GGYRCC	2 cut(s)	115, 280
BsiEI	CGRYCG	3 cut(s)	221, 356, 667
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	7 cut(s)	211, 217, 509, 559, 588, 624, 667
BsiWI	CGTACG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	5 cut(s)	216, 316, 343, 565, 630
BsmAI	GTCTC	3 cut(s)	82, 204, 343
BsmBI	CGTCTC	2 cut(s)	204, 343
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	214, 220, 666
BsoBI	CYCGRG	1 cut(s)	381
Bsp119I	TTCGAA	3 cut(s)	58, 136, 466
Bsp1286I	GDGCHC	3 cut(s)	25, 382, 394
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	228, 261, 353, 424, 536
Bsp68I	TCGCGA	1 cut(s)	423
BspANI	GGCC	3 cut(s)	214, 220, 666
BspCNI	CTCAG	2 cut(s)	18, 486
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	4 cut(s)	260, 295, 423, 663
BspLI	GGNNCC	3 cut(s)	117, 215, 282
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	3 cut(s)	58, 136, 466
BspT107I	GGYRCC	2 cut(s)	115, 280
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	3 cut(s)	209, 215, 661
BssMI	GATC	5 cut(s)	228, 261, 353, 424, 536
BssNI	GRCGYC	4 cut(s)	116, 281, 371, 584
Bst2UI	CCWGG	2 cut(s)	37, 691
Bst4CI	ACNGT	2 cut(s)	52, 462
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	4 cut(s)	116, 281, 371, 584
BstBAI	YACGTR	1 cut(s)	530
BstBI	TTCGAA	3 cut(s)	58, 136, 466
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	26, 473
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	4 cut(s)	260, 295, 423, 663
BstH2I	RGCGCY	3 cut(s)	119, 152, 284
BstHHI	GCGC	4 cut(s)	118, 151, 246, 283
BstKTI	GATC	5 cut(s)	231, 264, 356, 427, 539
BstMAI	GTCTC	3 cut(s)	82, 204, 343
BstMBI	GATC	5 cut(s)	228, 261, 353, 424, 536
BstMCI	CGRYCG	3 cut(s)	221, 356, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 287, 377
BstNI	CCWGG	2 cut(s)	37, 691
BstSCI	CCNGG	5 cut(s)	35, 209, 215, 507, 689
BstUI	CGCG	4 cut(s)	260, 295, 423, 663
BstV1I	GCAGC	2 cut(s)	83, 158
BstZI	CGGCCG	2 cut(s)	218, 664
BsuRI	GGCC	3 cut(s)	214, 220, 666
BtgI	CCRYGG	1 cut(s)	661
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	348
BtuMI	TCGCGA	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	4 cut(s)	118, 151, 246, 283
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	39, 213, 621
Cfr42I	CCGCGG	1 cut(s)	664
CpoI	CGGWCCG	1 cut(s)	621
CseI	GACGC	2 cut(s)	360, 573
Csp6I	GTAC	3 cut(s)	297, 639, 744
CspI	CGGWCCG	1 cut(s)	621
CviAII	CATG	2 cut(s)	15, 153
CviQI	GTAC	3 cut(s)	297, 639, 744
DdeI	CTNAG	2 cut(s)	26, 473
DinI	GGCGCC	2 cut(s)	117, 282
DpnI	GATC	5 cut(s)	230, 263, 355, 426, 538
DpnII	GATC	5 cut(s)	228, 261, 353, 424, 536
EaeI	YGGCCR	2 cut(s)	218, 664
EagI	CGGCCG	2 cut(s)	218, 664
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	2 cut(s)	646, 647
Ecl136II	GAGCTC	1 cut(s)	392
EclXI	CGGCCG	2 cut(s)	218, 664
Eco24I	GRGCYC	3 cut(s)	25, 382, 394
Eco47I	GGWCC	2 cut(s)	39, 621
Eco52I	CGGCCG	2 cut(s)	218, 664
Eco53kI	GAGCTC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	35, 689
EcoT38I	GRGCYC	3 cut(s)	25, 382, 394
EgeI	GGCGCC	2 cut(s)	117, 282
EheI	GGCGCC	2 cut(s)	117, 282
Esp3I	CGTCTC	2 cut(s)	204, 343
FaeI	CATG	2 cut(s)	18, 156
FaiI	YATR	5 cut(s)	10, 16, 154, 193, 449
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	2 cut(s)	14, 152
FauI	CCCGC	3 cut(s)	101, 188, 314
FbaI	TGATCA	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	7 cut(s)	97, 114, 147, 570, 592, 661, 664
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	3 cut(s)	25, 382, 394
Fsp4HI	GCNGC	7 cut(s)	97, 114, 147, 570, 592, 661, 664
GlaI	GCGC	4 cut(s)	117, 150, 245, 282
GluI	GCNGC	7 cut(s)	97, 114, 147, 570, 592, 661, 664
HaeII	RGCGCY	3 cut(s)	119, 152, 284
HaeIII	GGCC	3 cut(s)	214, 220, 666
HapII	CCGG	7 cut(s)	211, 217, 509, 559, 588, 624, 667
HgaI	GACGC	2 cut(s)	360, 573
HhaI	GCGC	4 cut(s)	118, 151, 246, 283
Hin1I	GRCGYC	4 cut(s)	116, 281, 371, 584
Hin1II	CATG	2 cut(s)	18, 156
Hin6I	GCGC	4 cut(s)	116, 149, 244, 281
HinP1I	GCGC	4 cut(s)	116, 149, 244, 281
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	4 cut(s)	75, 223, 468, 487
HpaII	CCGG	7 cut(s)	211, 217, 509, 559, 588, 624, 667
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	2 cut(s)	303, 491
Hpy188III	TCNNGA	5 cut(s)	375, 422, 540, 559, 601
Hpy8I	GTNNAC	2 cut(s)	303, 491
Hpy99I	CGWCG	8 cut(s)	91, 132, 162, 304, 325, 376, 435, 546
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	2 cut(s)	52, 462
HpyCH4IV	ACGT	6 cut(s)	299, 323, 524, 529, 613, 677
HpyCH4V	TGCA	1 cut(s)	699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 287, 377
HpyF3I	CTNAG	2 cut(s)	26, 473
HpySE526I	ACGT	6 cut(s)	299, 323, 524, 529, 613, 677
Hsp92I	GRCGYC	4 cut(s)	116, 281, 371, 584
Hsp92II	CATG	2 cut(s)	18, 156
HspAI	GCGC	4 cut(s)	116, 149, 244, 281
KasI	GGCGCC	2 cut(s)	115, 280
Kpn2I	TCCGGA	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	536
KspI	CCGCGG	1 cut(s)	664
Kzo9I	GATC	5 cut(s)	228, 261, 353, 424, 536
LmnI	GCTCC	5 cut(s)	295, 397, 445, 480, 717
Lsp1109I	GCAGC	2 cut(s)	83, 158
LweI	GCATC	1 cut(s)	686
MaeII	ACGT	6 cut(s)	299, 323, 524, 529, 613, 677
MaeIII	GTNAC	2 cut(s)	525, 609
MalI	GATC	5 cut(s)	230, 263, 355, 426, 538
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	5 cut(s)	228, 261, 353, 424, 536
MboII	GAAGA	3 cut(s)	76, 419, 642
MhlI	GDGCHC	3 cut(s)	25, 382, 394
MluCI	AATT	3 cut(s)	138, 495, 577
Mly113I	GGCGCC	2 cut(s)	116, 281
MlyI	GAGTC	2 cut(s)	84, 496
MmeI	TCCRAC	4 cut(s)	191, 320, 419, 467
MnlI	CCTC	9 cut(s)	94, 321, 482, 505, 539, 627, 637, 716, 743
MroI	TCCGGA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	96, 663
MspI	CCGG	7 cut(s)	211, 217, 509, 559, 588, 624, 667
MspR9I	CCNGG	5 cut(s)	37, 211, 217, 509, 691
MvaI	CCWGG	2 cut(s)	37, 691
MvnI	CGCG	4 cut(s)	260, 295, 423, 663
MwoI	GCNNNNNNNGC	3 cut(s)	180, 287, 377
NarI	GGCGCC	2 cut(s)	116, 281
NciI	CCSGG	3 cut(s)	211, 217, 509
NdeII	GATC	5 cut(s)	228, 261, 353, 424, 536
NlaIII	CATG	2 cut(s)	18, 156
NlaIV	GGNNCC	3 cut(s)	117, 215, 282
NmuCI	GTSAC	2 cut(s)	525, 609
NruI	TCGCGA	1 cut(s)	423
NspV	TTCGAA	3 cut(s)	58, 136, 466
OliI	CACNNNNGTG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	4 cut(s)	86, 133, 427, 547
PfeI	GAWTC	2 cut(s)	223, 468
Pfl23II	CGTACG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	98, 115, 148, 571, 593, 662, 665
Ple19I	CGATCG	1 cut(s)	356
PleI	GAGTC	2 cut(s)	83, 495
PluTI	GGCGCC	2 cut(s)	119, 284
PpsI	GAGTC	2 cut(s)	83, 495
Ppu21I	YACGTR	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	35, 689
PspGI	CCWGG	2 cut(s)	35, 689
PspLI	CGTACG	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	117, 215, 282
PspPI	GGNCC	3 cut(s)	39, 213, 621
PvuI	CGATCG	1 cut(s)	356
RruI	TCGCGA	1 cut(s)	423
RsaI	GTAC	3 cut(s)	298, 640, 745
RsaNI	GTAC	3 cut(s)	297, 639, 744
RseI	CAYNNNNRTG	1 cut(s)	50
Rsr2I	CGGWCCG	1 cut(s)	621
RsrII	CGGWCCG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	394
SacII	CCGCGG	1 cut(s)	664
SalI	GTCGAC	1 cut(s)	301
SatI	GCNGC	7 cut(s)	97, 114, 147, 570, 592, 661, 664
Sau3AI	GATC	5 cut(s)	228, 261, 353, 424, 536
Sau96I	GGNCC	3 cut(s)	39, 213, 621
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	2 cut(s)	84, 496
ScrFI	CCNGG	5 cut(s)	37, 211, 217, 509, 691
SduI	GDGCHC	3 cut(s)	25, 382, 394
SfaNI	GCATC	1 cut(s)	686
SfoI	GGCGCC	2 cut(s)	117, 282
Sfr303I	CCGCGG	1 cut(s)	664
SfuI	TTCGAA	3 cut(s)	58, 136, 466
SgrBI	CCGCGG	1 cut(s)	664
SinI	GGWCC	2 cut(s)	39, 621
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
Sse9I	AATT	3 cut(s)	138, 495, 577
SspDI	GGCGCC	2 cut(s)	115, 280
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	5 cut(s)	35, 209, 215, 507, 689
TaaI	ACNGT	2 cut(s)	52, 462
TaiI	ACGT	6 cut(s)	302, 326, 527, 532, 616, 680
TaqI	TCGA	6 cut(s)	58, 86, 136, 302, 374, 466
TasI	AATT	3 cut(s)	138, 495, 577
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	5 cut(s)	116, 572, 594, 663, 666
TfiI	GAWTC	2 cut(s)	223, 468
TseFI	GTSAC	2 cut(s)	525, 609
TseI	GCWGC	2 cut(s)	96, 146
Tsp45I	GTSAC	2 cut(s)	525, 609
TspDTI	ATGAA	1 cut(s)	642
TspGWI	ACGGA	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	39, 621
XapI	RAATTY	2 cut(s)	495, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.