Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024624

Physical Location & Seq

Genomic Coordinates Reverse (-)

5046625 .. 5047711

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGAGCTCGTTGCTCCAAGTTTTCCCTCTGCTTCTGGCCGTCCAATACCAAATCCAATCCCAACGACTCTTCAGACCCAGAGAATAAGAACAAAAATGAGGATTCGCTTCCTGGGTTCAGCGAGTTCAGCCTGGACCAACTGAAAGCTGCCACGTCAGGATTCTCGTCGGAGAACGTGGTCTCCGAGCACGGAGAGAAAGCTCCCAATGTGGTCTACAAAGGAAAGCTCGAAGACGGCCGTTGGATCGCCGTTAAGCGCTTCAACCGATTAGCTTGGCCTGATTCGCGCCAATTTCTGGAGGAGGCTAGAGCTGTGGGGCAGCTGAGGAACGAGCGATTGGCGAATTTGATCGGGTGTTGCTGTGAGGGTGACAATAGATTGCTTGTGGCCGAGTTCATGCCTAATGAAACTCTCTCTAAGCATCTCTTTCATTGGGAAGCTCAGCCGATGAAATGGGCAATGAGGTTGCGAGTGGCTTTATATCTCGCGCAAGCTTTAGACTATTGCAGCAGTAAAGGGCAGGCGTTATACCATGATCGATTAATGCTTATAGAGTTCTCTTTGATCAGGATGGGAATCCCAGACTCTCCTGCTTTGGTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

203

Amino Acids

22.87

Weight (kDa)

6.9

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024624)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06460 pycom12g14870
rosa_samantha	Rh3DG134700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	2 cut(s)	289, 491
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	3 cut(s)	38, 238, 390
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	112, 132
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	9 cut(s)	8, 149, 203, 229, 275, 314, 325, 443, 497
AluI	AGCT	9 cut(s)	8, 149, 203, 229, 275, 314, 325, 443, 497
Alw21I	GWGCWC	2 cut(s)	10, 192
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	260
AoxI	GGCC	4 cut(s)	38, 238, 278, 390
ApeKI	GCWGC	3 cut(s)	149, 322, 510
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	545
AspLEI	GCGC	3 cut(s)	261, 291, 493
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	10, 192
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	136, 334, 522
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	4 cut(s)	25, 225, 236, 253
BciT130I	CCWGG	2 cut(s)	114, 134
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	262
BisI	GCNGC	3 cut(s)	150, 323, 511
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	3 cut(s)	151, 324, 512
Bme1390I	CCNGG	2 cut(s)	114, 134
Bme18I	GGWCC	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	114, 134
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	578
BseBI	CCWGG	2 cut(s)	114, 134
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	579
BseJI	GATNNNNATC	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	317, 458
BseRI	GAGGAG	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	136, 334, 522
Bsh1236I	CGCG	2 cut(s)	289, 491
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	40, 240, 280, 392
BshVI	ATCGAT	1 cut(s)	541
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	10, 192
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	40, 240, 280, 392
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	10, 192
Bsp143I	GATC	4 cut(s)	246, 351, 538, 567
Bsp1720I	GCTNAGC	1 cut(s)	444
BspANI	GGCC	4 cut(s)	40, 240, 280, 392
BspCNI	CTCAG	2 cut(s)	318, 457
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	2 cut(s)	289, 491
BspPI	GGATC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	246, 351, 538, 567
Bst2UI	CCWGG	2 cut(s)	114, 134
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	495, 525
BstDEI	CTNAG	3 cut(s)	326, 420, 444
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	2 cut(s)	289, 491
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	3 cut(s)	261, 291, 493
BstKTI	GATC	4 cut(s)	249, 354, 541, 570
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	246, 351, 538, 567
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 286
BstNI	CCWGG	2 cut(s)	114, 134
BstSCI	CCNGG	2 cut(s)	112, 132
BstUI	CGCG	2 cut(s)	289, 491
BstV1I	GCAGC	3 cut(s)	136, 334, 522
BstV2I	GAAGAC	1 cut(s)	240
BstZI	CGGCCG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	40, 240, 280, 392
BsuTUI	ATCGAT	1 cut(s)	541
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	579
Cac8I	GCNNGC	2 cut(s)	495, 525
CfoI	GCGC	3 cut(s)	261, 291, 493
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	541
CviAII	CATG	2 cut(s)	400, 536
DdeI	CTNAG	3 cut(s)	326, 420, 444
DpnI	GATC	4 cut(s)	248, 353, 540, 569
DpnII	GATC	4 cut(s)	246, 351, 538, 567
EaeI	YGGCCR	3 cut(s)	38, 238, 390
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	112, 132
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	403, 539
FaiI	YATR	6 cut(s)	401, 484, 532, 537, 554, 607
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	2 cut(s)	399, 535
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	150, 323, 511
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	150, 323, 511
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	3 cut(s)	260, 290, 492
GluI	GCNGC	3 cut(s)	150, 323, 511
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	40, 240, 280, 392
HhaI	GCGC	3 cut(s)	261, 291, 493
Hin1II	CATG	2 cut(s)	403, 539
Hin6I	GCGC	3 cut(s)	259, 289, 491
HinP1I	GCGC	3 cut(s)	259, 289, 491
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	6 cut(s)	68, 104, 162, 284, 579, 587
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	76, 172, 187
Hpy188III	TCNNGA	3 cut(s)	159, 299, 571
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	155, 177
HpyCH4V	TGCA	1 cut(s)	510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 286
HpyF3I	CTNAG	3 cut(s)	326, 420, 444
HpySE526I	ACGT	2 cut(s)	155, 177
Hsp92II	CATG	2 cut(s)	403, 539
HspAI	GCGC	3 cut(s)	259, 289, 491
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	246, 351, 538, 567
LmnI	GCTCC	3 cut(s)	5, 20, 208
Lsp1109I	GCAGC	3 cut(s)	136, 334, 522
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	155, 177
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	248, 353, 540, 569
MboI	GATC	4 cut(s)	246, 351, 538, 567
MboII	GAAGA	2 cut(s)	63, 245
MhlI	GDGCHC	2 cut(s)	10, 192
MluCI	AATT	2 cut(s)	293, 346
MlyI	GAGTC	2 cut(s)	62, 581
MmeI	TCCRAC	2 cut(s)	150, 224
MnlI	CCTC	7 cut(s)	38, 94, 295, 298, 321, 361, 459
MseI	TTAA	2 cut(s)	255, 545
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	114, 134
MvaI	CCWGG	2 cut(s)	114, 134
MvnI	CGCG	2 cut(s)	289, 491
MwoI	GCNNNNNNNGC	2 cut(s)	129, 286
NdeII	GATC	4 cut(s)	246, 351, 538, 567
NlaIII	CATG	2 cut(s)	403, 539
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	4 cut(s)	104, 162, 284, 579
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	151, 324, 512
PleI	GAGTC	2 cut(s)	62, 581
PpsI	GAGTC	2 cut(s)	62, 581
PshBI	ATTAAT	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	112, 132
PspGI	CCWGG	2 cut(s)	112, 132
PspPI	GGNCC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	255, 545
SatI	GCNGC	3 cut(s)	150, 323, 511
Sau3AI	GATC	4 cut(s)	246, 351, 538, 567
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	62, 581
ScrFI	CCNGG	2 cut(s)	114, 134
SduI	GDGCHC	2 cut(s)	10, 192
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	293, 346
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	112, 132
TaiI	ACGT	2 cut(s)	158, 180
TaqI	TCGA	2 cut(s)	231, 541
TasI	AATT	2 cut(s)	293, 346
TfiI	GAWTC	4 cut(s)	104, 162, 284, 579
Tru1I	TTAA	2 cut(s)	255, 545
Tru9I	TTAA	2 cut(s)	255, 545
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	3 cut(s)	149, 322, 510
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	388, 422, 423, 467
TspGWI	ACGGA	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	545
XapI	RAATTY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.