Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0024624

Physical Location & Seq

Genomic Coordinates Reverse (-)

11431831 .. 11432694

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAGCCCGCTGCTCCAGATTCTCTCTCTGCTGGTTCCACTCCCACCTTAAACCGTCCGTCCTCGAATCCACCGACCTCGAGAATGGGGGCGGCAAAAGCGACAAAAACTCGTGCCCGAGCTTCACCGAGTTCAGCTTAGACCAACTGAAAGCCGCCACGTGCGGCTTCTCCTCCGACAACATAGTCTCGGAGCACGGCGAGAAAGCCCCCAACGTTGTCTACAAAGGAAAGCTCGACAACAACGCCGACCGTTGGATCGCCGTCAAGCGCTTCAACAAGCTGGCCTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCAAGATCGGTTGGGACATTGAGAAGTGAGAGATTGGCGAATCTGATTGGGTGTTGTTGTGAAGGAGATGAGAGGTTGTTGGTGGCTGAGTTTATGCCACATGAGACTTTGGCAAAGCATTTGTTTCATTGGGAGAGCCAGCCAATGAGATGGGCTATGAGGTTGAGGGTGGCTCTGTATTTGGCTCAGGCTCTTGAGTATTGTAGTGGTAAAGGGCGCGCATTGTATCATGATCTCAATGCTTACAGGGTTTTGTTTGATAAGGTAGTTCAATTGGTTGAAGTCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

203

Amino Acids

23.09

Weight (kDa)

7.6

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 194	1.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	73 - 194	6.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024624)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06460 pycom12g14870
rosa_samantha	Rh3DG134700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AbsI	CCTCGAGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	537
AciI	CCGC	4 cut(s)	10, 93, 156, 165
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	266
AcvI	CACGTG	1 cut(s)	162
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	277, 590, 599
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	4 cut(s)	123, 138, 235, 283
AluI	AGCT	4 cut(s)	123, 138, 235, 283
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	193, 416
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	3 cut(s)	80, 118, 311
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	2 cut(s)	285, 290
ApeKI	GCWGC	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	273, 537, 539
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	3 cut(s)	80, 118, 311
BaeGI	GKGCMC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	112
BbrPI	CACGTG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	1 cut(s)	462
BceAI	ACGGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	193, 416
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	4 cut(s)	13, 94, 156, 166
BlsI	GCNGC	4 cut(s)	14, 95, 157, 167
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	3 cut(s)	80, 118, 311
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	7, 38
BmrFI	CCNGG	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	396, 518
BsePI	GCGCGC	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	287, 292
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	3 cut(s)	80, 118, 311
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	193, 416
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	287, 292
BsoBI	CYCGRG	3 cut(s)	80, 118, 311
Bsp1286I	GDGCHC	3 cut(s)	10, 119, 198
Bsp143I	GATC	3 cut(s)	258, 323, 550
BspACI	CCGC	4 cut(s)	10, 93, 156, 165
BspANI	GGCC	2 cut(s)	287, 292
BspCNI	CTCAG	2 cut(s)	397, 517
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	7, 38
BspPI	GGATC	1 cut(s)	266
BssHII	GCGCGC	1 cut(s)	535
BssMI	GATC	3 cut(s)	258, 323, 550
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	57, 254
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	10, 285, 458, 537
BstDEI	CTNAG	3 cut(s)	139, 405, 504
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	273, 537, 539
BstKTI	GATC	3 cut(s)	261, 326, 553
BstMAI	GTCTC	2 cut(s)	193, 416
BstMBI	GATC	3 cut(s)	258, 323, 550
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 289
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	287, 292
Cac8I	GCNNGC	4 cut(s)	10, 285, 458, 537
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	3 cut(s)	273, 537, 539
Cfr13I	GGNCC	1 cut(s)	291
CviAII	CATG	2 cut(s)	419, 548
DdeI	CTNAG	3 cut(s)	139, 405, 504
DpnI	GATC	3 cut(s)	260, 325, 552
DpnII	GATC	3 cut(s)	258, 323, 550
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	162
Eco88I	CYCGRG	3 cut(s)	80, 118, 311
EcoRII	CCWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	422, 551
FaiI	YATR	5 cut(s)	185, 413, 420, 476, 549
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	418, 547
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	13, 94, 156, 166
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	4 cut(s)	13, 94, 156, 166
GlaI	GCGC	3 cut(s)	272, 536, 538
GluI	GCNGC	4 cut(s)	13, 94, 156, 166
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	287, 292
HhaI	GCGC	3 cut(s)	273, 537, 539
Hin1II	CATG	2 cut(s)	422, 551
Hin6I	GCGC	3 cut(s)	271, 535, 537
HinP1I	GCGC	3 cut(s)	271, 535, 537
HinfI	GANTC	4 cut(s)	21, 68, 296, 358
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	178, 193, 363
Hpy188III	TCNNGA	4 cut(s)	18, 82, 512, 548
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	57, 254
HpyCH4IV	ACGT	2 cut(s)	161, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 289
HpyF3I	CTNAG	3 cut(s)	139, 405, 504
HpySE526I	ACGT	2 cut(s)	161, 216
Hsp92II	CATG	2 cut(s)	422, 551
HspAI	GCGC	3 cut(s)	271, 535, 537
Kzo9I	GATC	3 cut(s)	258, 323, 550
LmnI	GCTCC	3 cut(s)	5, 20, 193
LpnPI	CCDG	8 cut(s)	19, 31, 269, 274, 301, 470, 491, 550
MaeII	ACGT	2 cut(s)	161, 216
MalI	GATC	3 cut(s)	260, 325, 552
MboI	GATC	3 cut(s)	258, 323, 550
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	3 cut(s)	10, 119, 198
MluCI	AATT	2 cut(s)	305, 590
MmeI	TCCRAC	2 cut(s)	201, 236
MnlI	CCTC	8 cut(s)	74, 89, 184, 307, 320, 384, 471, 477
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	99, 289
NdeII	GATC	3 cut(s)	258, 323, 550
NlaIII	CATG	2 cut(s)	422, 551
NlaIV	GGNNCC	2 cut(s)	7, 38
PaeR7I	CTCGAG	2 cut(s)	80, 311
PagI	TCATGA	1 cut(s)	547
PauI	GCGCGC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	21, 68, 296, 358
PkrI	GCNGC	4 cut(s)	14, 95, 157, 167
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	7, 38
PspPI	GGNCC	1 cut(s)	291
PspXI	VCTCGAGB	1 cut(s)	311
PteI	GCGCGC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	13, 94, 156, 166
Sau3AI	GATC	3 cut(s)	258, 323, 550
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	3 cut(s)	10, 119, 198
Sfr274I	CTCGAG	2 cut(s)	80, 311
SlaI	CTCGAG	2 cut(s)	80, 311
SmlI	CTYRAG	3 cut(s)	80, 311, 512
SmoI	CTYRAG	3 cut(s)	80, 311, 512
Sse9I	AATT	2 cut(s)	305, 590
SsiI	CCGC	4 cut(s)	10, 93, 156, 165
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	57, 254
TaiI	ACGT	2 cut(s)	164, 219
TaqI	TCGA	4 cut(s)	66, 81, 237, 312
TasI	AATT	2 cut(s)	305, 590
TauI	GCSGC	3 cut(s)	96, 158, 168
TfiI	GAWTC	4 cut(s)	21, 68, 296, 358
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	49
XhoI	CTCGAG	2 cut(s)	80, 311
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.