pycom03g09850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0029233
Physical Location & Seq
Forward (+)
8619669 .. 8620396
728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09850.1

Sequence Viewer

Length: 402 bp
ATGCTAAATTCTGGGCATAATGTAAACCGCTGTAGTGCAACACTGTCATCAACTATGCCTTCTTTGCCCCAATGTTTGCCATTGGAGCCTATTATGTTAATCGATCAAAAGTACACCCGCTCAGGAGAACTAAGTAGGGTTCTGGGCTTTCCTCTTGGGAGTATAACAGACGACCATTCTCTTGGAGTTGGCCATTCGAAACCTCCACCTCCGGTGGCAACTGAGGAGCTAAAGCACTTCAAAGAAAGTGTGCAAGATGCCTCTAGAAGGGCCAGGGACAGAGTAAAAATGTTGCGTGAATCTATTTTCAAATTGGATAAGTACAAAGAAGCTTTAAGCTCAAAGAAGAGACAGCGTAGTGATCGATCAAGTTGGTATCAATTGAGAGATCAAATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

134

Amino Acids

15.16

Weight (kDa)

9.55

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029233)

Species Orthologous Gene IDs
pyrus_communis pycom03g09850
rosa_multiflora Rmu_co8310847.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 2 cut(s) 28, 118
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 113, 323
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 241, 310
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 3 cut(s) 229, 332, 339
AluI AGCT 3 cut(s) 229, 332, 339
Alw26I GTCTC 1 cut(s) 343
AoxI GGCC 2 cut(s) 190, 270
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 197
BalI TGGCCA 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 197
Bsa29I ATCGAT 2 cut(s) 102, 364
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 274
BseCI ATCGAT 2 cut(s) 102, 364
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 135, 213
BseRI GAGGAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 192, 272
BshVI ATCGAT 2 cut(s) 102, 364
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 2 cut(s) 192, 272
Bsp119I TTCGAA 1 cut(s) 197
Bsp143I GATC 4 cut(s) 103, 361, 365, 388
BspACI CCGC 2 cut(s) 28, 118
BspANI GGCC 2 cut(s) 192, 272
BspCNI CTCAG 2 cut(s) 134, 214
BspDI ATCGAT 2 cut(s) 102, 364
BspLI GGNNCC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 4 cut(s) 103, 361, 365, 388
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 121, 131, 222
BstENI CCTNNNNNAGG 1 cut(s) 265
BstKTI GATC 4 cut(s) 106, 364, 368, 391
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 4 cut(s) 103, 361, 365, 388
BstMWI GCNNNNNNNGC 2 cut(s) 64, 85
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 182
Bsu15I ATCGAT 2 cut(s) 102, 364
BsuRI GGCC 2 cut(s) 192, 272
BsuTUI ATCGAT 2 cut(s) 102, 364
BtsIMutI CAGTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 102, 364
Csp6I GTAC 2 cut(s) 112, 322
CviJI RGCY 7 cut(s) 88, 147, 192, 229, 272, 332, 339
CviKI_1 RGCY 7 cut(s) 88, 147, 192, 229, 272, 332, 339
CviQI GTAC 2 cut(s) 112, 322
DdeI CTNAG 3 cut(s) 121, 131, 222
DpnI GATC 4 cut(s) 105, 363, 367, 390
DpnII GATC 4 cut(s) 103, 361, 365, 388
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 272
FaiI YATR 4 cut(s) 18, 56, 95, 164
FaqI GGGAC 1 cut(s) 290
FauI CCCGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 192, 272
HapII CCGG 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 25, 114
Hpy188III TCNNGA 2 cut(s) 123, 264
Hpy8I GTNNAC 2 cut(s) 25, 114
HpyAV CCTTC 2 cut(s) 69, 261
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 38, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 85
HpyF3I CTNAG 3 cut(s) 121, 131, 222
Kzo9I GATC 4 cut(s) 103, 361, 365, 388
LmnI GCTCC 2 cut(s) 85, 226
LpnPI CCDG 5 cut(s) 108, 128, 225, 259, 286
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 264
MalI GATC 4 cut(s) 105, 363, 367, 390
MbiI CCGCTC 1 cut(s) 120
MboI GATC 4 cut(s) 103, 361, 365, 388
MboII GAAGA 1 cut(s) 358
MfeI CAATTG 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 7, 311, 380
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 5 cut(s) 162, 213, 217, 219, 271
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 98, 335
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 64, 85
NdeII GATC 4 cut(s) 103, 361, 365, 388
NlaIV GGNNCC 1 cut(s) 87
NspV TTCGAA 1 cut(s) 197
PfeI GAWTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 2 cut(s) 113, 323
RsaNI GTAC 2 cut(s) 112, 322
SaqAI TTAA 2 cut(s) 98, 335
Sau3AI GATC 4 cut(s) 103, 361, 365, 388
Sau96I GGNCC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 274
SetI ASST 5 cut(s) 205, 211, 231, 334, 341
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 197
Sse9I AATT 3 cut(s) 7, 311, 380
SsiI CCGC 2 cut(s) 28, 118
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 102, 197, 364
TasI AATT 3 cut(s) 7, 311, 380
TatI WGTACW 2 cut(s) 111, 321
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 98, 335
Tru9I TTAA 2 cut(s) 98, 335
TscAI CASTG 1 cut(s) 48
TspRI CASTG 1 cut(s) 48
XagI CCTNNNNNAGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 7
XbaI TCTAGA 1 cut(s) 263
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.