Rmu_co8310847.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8310847.1
OG0029233
Physical Location & Seq
Forward (+)
1 .. 546
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8310847.1_g000001.1.cds

Sequence Viewer

Length: 250 bp
ggacagagcaaaaatgctgcgggattccatattcaaattggataagtatagagatgctttgagctcaaagaagcgacagcggagtgatctttcatcaagtgagaggtcaaatggagtaagcttagtgaaaccgggaagtcataaaaatcctcacggaattatgactcaaaggctagaagacagagccaagggtgttgggcttagtaaacgcgttcgtacgtcggtggctgatgtgcaggtttgtatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

82

Amino Acids

9.2

Weight (kDa)

10.53

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029233)

Species Orthologous Gene IDs
pyrus_communis pycom03g09850
rosa_multiflora Rmu_co8310847.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
AccII CGCG 1 cut(s) 211
AciI CCGC 2 cut(s) 20, 80
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 2 cut(s) 64, 121
AluI AGCT 2 cut(s) 64, 121
Alw21I GWGCWC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 133
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 133
BfaI CTAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 132
BsiWI CGTACG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 2 cut(s) 20, 80
BspFNI CGCG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 122, 201
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 1 cut(s) 89
BstMBI GATC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 184
BveI ACCTGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 6 cut(s) 64, 121, 173, 186, 200, 228
CviKI_1 RGCY 6 cut(s) 64, 121, 173, 186, 200, 228
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 122, 201
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 187
FaiI YATR 4 cut(s) 30, 49, 142, 162
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 18
HapII CCGG 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 24, 164
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 122, 201
HpySE526I ACGT 1 cut(s) 219
Kzo9I GATC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 145, 222
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 36, 157
MluI ACGCGT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 97, 160
MseI TTAA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 211
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 24
Pfl23II CGTACG 1 cut(s) 216
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 66
PspLI CGTACG 1 cut(s) 216
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 86
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 66, 108, 123, 222, 241
SfaNI GCATC 1 cut(s) 44
SgeI CNNG 8 cut(s) 33, 109, 144, 145, 165, 186, 200, 222
Sse9I AATT 2 cut(s) 36, 157
SsiI CCGC 2 cut(s) 20, 80
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 222
TasI AATT 2 cut(s) 36, 157
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.