pycom03g10490

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0028851
Physical Location & Seq
Forward (+)
9694120 .. 9694631
512 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10490.1

Sequence Viewer

Length: 381 bp
ATGAATAGGAATCTGGGATTGGATGAGTTCAGGTTTCTCTTGAAAACTATTACCAATTCGGGCATAGGCGAGGAAACTTACTGTGCAAGAAACATCATCGAAGGCCGAGAAGAAAATGCAACCCTAGAAGATGAACATGTGGAGATGGATGGCATCATCTTCGACATGCTGGGCAAGCTTTTCGCTAGGGCTACATCAATTTCTCCGTCACAAATTGACATTCTTGTCATCCATGTGTCGATGTTCTCCCCTGCGCCCTCCCTATCGTCGCGTATAGTGAATCATTACAAGATGAGGGACGACATCAAGAGCTTCAACCCCTCGGGAATGGGCTGCAGTGCGACCCTTATTGCCGTTAACGTTGTACAAAACTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

127

Amino Acids

14.04

Weight (kDa)

5.08

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 2 - 126 5e-43 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028851)

Species Orthologous Gene IDs
malus_domestica MD07G1187200.v1.1
pyrus_communis pycom03g10490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccII CGCG 1 cut(s) 271
AclI AACGTT 1 cut(s) 360
AfaI GTAC 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 43, 316
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 178, 312
AluI AGCT 2 cut(s) 178, 312
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 322
BbvI GCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 139, 143
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 4 cut(s) 142, 163, 176, 197
BfaI CTAG 3 cut(s) 125, 186, 379
BfmI CTRYAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 322
BmsI GCATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 3 cut(s) 28, 154, 228
BseXI GCAGC 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 364
BspANI GGCC 1 cut(s) 105
BspFNI CGCG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 176
BstF5I GGATG 3 cut(s) 28, 154, 228
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 140, 169
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 28, 154, 228
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 137, 166, 233
CviJI RGCY 5 cut(s) 105, 178, 191, 312, 333
CviKI_1 RGCY 5 cut(s) 105, 178, 191, 312, 333
CviQI GTAC 1 cut(s) 365
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 322
FaeI CATG 3 cut(s) 140, 169, 236
FaiI YATR 5 cut(s) 65, 138, 167, 234, 275
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 136, 165, 232
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 3 cut(s) 35, 161, 215
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 3 cut(s) 125, 186, 379
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 334
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 105
HhaI GCGC 1 cut(s) 256
Hin1II CATG 3 cut(s) 140, 169, 236
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 10, 280
HpaI GTTAAC 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 40, 307, 324
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 86, 119, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 140, 169, 236
HspAI GCGC 1 cut(s) 254
KspAI GTTAAC 1 cut(s) 358
LpnPI CCDG 3 cut(s) 16, 155, 264
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 162
MaeI CTAG 3 cut(s) 125, 186, 379
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 207
MboII GAAGA 3 cut(s) 122, 140, 151
MluCI AATT 3 cut(s) 55, 198, 213
MnlI CCTC 4 cut(s) 64, 268, 288, 331
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 233
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 175
NlaIII CATG 3 cut(s) 140, 169, 236
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 207
NspI RCATGY 2 cut(s) 140, 169
PciI ACATGT 1 cut(s) 136
PfeI GAWTC 2 cut(s) 10, 280
PkrI GCNGC 1 cut(s) 335
PscI ACATGT 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 338
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 334
SetI ASST 4 cut(s) 35, 180, 314, 363
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 3 cut(s) 55, 198, 213
SspMI CTAG 3 cut(s) 125, 186, 379
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 99, 162, 239
TasI AATT 3 cut(s) 55, 198, 213
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 2 cut(s) 10, 280
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 17, 147
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 343
XceI RCATGY 2 cut(s) 140, 169
XspI CTAG 3 cut(s) 125, 186, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.