Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029242

Physical Location & Seq

Genomic Coordinates Forward (+)

17813197 .. 17817553

Gene Structure 4357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTGGATCCTATGGACCTGCTCCGATCCAATCTCTCCCGGGTTCGGATCCCGGAACCCACCAACCGCATCTACAAGCAAGAATGCTGCATCTCTTTCGACACTCCGAGATCAGAAGGTGGTTTGTTTGTGGACATGAACACATTTCTTGCTTTTGGGAAGGATTGTGTGGGCTGGAACTATGAAAAGACTGGAAATCCAGTTTATTTGCATATAAAGCAAACAAAAGTGTTGGTTCCTGAAGATAGGCCTTTGAAGAAACCCACACTCATGGCTATAGGTGTCGATGGGGGATTTGATAACAATGAGCCTGAATATGAAGAAACACACAATATAGTCCTACTGCCTGATTATGTAACTCTTCCATTTCCTTCTGTCGAATTACCAGAGAAGGTAAGATTGGCAGTTGATGCCATTTTATTGGCTGAGGGTGCTGAGAGGAAAGAACAACTTGCAGCATGGACAGCCGAGAAGAAGCAAGTTAGTGCTTATGCAACGAATTTTCAACAGATTGACAATGGTATTATTATTCCTTCATCTGGCTGGAAATGTTGCAAGTGTGATAAAAGAGAAAACCTTTGGTTAAATCTAACTGATGGAATGATCCTTTGTGGGAGGAAAAATTGGGATGGAACTGGTGGCAACGACCATGCCATTGAACACTATAAGGAAACAGGCTATCCTCTTGCTGTAAAGCTGGGGACAATTACAGCTGATCTGGAAGGAGCAGATGTTTTCTCATACCCAGAGGATGATAGTGTATTAGACCCACTTTTAGCGCAACATCTGGCATTTTTTGGCATTGATTTCTCATCATTACTGAAGACAGAAATGACAACTGCTGAAAGAGAGCTTGACCAGAATACCAATTTTGACTGGAACCGGATTCAAGAAAGTGGACAGGAGGTTGAACCGATATTTGGACCTGGTTACAATGGACTTGTCAATCTTGGAAACAGCTGTTATATGGCAGCGACTATGCAAGTTGTGTTTTCAACACACTCTTTCTATTCCGGCGATACTTCAAGAATCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

347

Amino Acids

38.78

Weight (kDa)

4.77

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP_var	PF17807	15 - 76	1.6e-22	Variant UBP zinc finger
zf-UBP	PF02148	184 - 257	4.2e-18	Zn-finger in ubiquitin-hydrolases and other protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029242)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g16650
rosa_multiflora	Rmu_co8345997.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	6 cut(s)	2, 15, 21, 43, 56, 598
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	261, 842
AfiI	CCNNNNNNNGG	3 cut(s)	45, 539, 920
AgsI	TTSAA	7 cut(s)	256, 506, 659, 890, 911, 996, 1026
AjnI	CCWGG	1 cut(s)	925
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 903, 935
AluBI	AGCT	4 cut(s)	697, 713, 853, 960
AluI	AGCT	4 cut(s)	697, 713, 853, 960
AlwI	GGATC	6 cut(s)	2, 15, 21, 43, 56, 598
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	87, 455, 971
ApoI	RAATTY	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	2 cut(s)	16, 923
AsuC2I	CCSGG	3 cut(s)	40, 41, 53
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	16, 923
BamHI	GGATCC	2 cut(s)	7, 48
BbsI	GAAGAC	1 cut(s)	830
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	74, 467, 983
BccI	CCATC	3 cut(s)	281, 590, 623
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	927
BcnI	CCSGG	3 cut(s)	40, 41, 53
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	88, 456, 972
BlsI	GCNGC	3 cut(s)	89, 457, 973
Bme1390I	CCNGG	4 cut(s)	40, 41, 53, 927
Bme18I	GGWCC	2 cut(s)	16, 923
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	16, 923
BmiI	GGNNCC	5 cut(s)	9, 50, 57, 237, 881
BmrFI	CCNGG	4 cut(s)	40, 41, 53, 927
BmsI	GCATC	3 cut(s)	78, 99, 400
BpiI	GAAGAC	1 cut(s)	830
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	3 cut(s)	40, 41, 53
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	882
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 539, 920
Bse1I	ACTGG	4 cut(s)	196, 200, 640, 881
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	634, 757
BseLI	CCNNNNNNNGG	3 cut(s)	45, 539, 920
BseMII	CTCAG	2 cut(s)	417, 426
BseNI	ACTGG	4 cut(s)	196, 200, 640, 881
BseXI	GCAGC	3 cut(s)	74, 467, 983
BseYI	CCCAGC	1 cut(s)	697
BshFI	GGCC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	40, 53, 883, 1014
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	3 cut(s)	45, 539, 920
BsmFI	GGGAC	1 cut(s)	715
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	418, 427
BspLI	GGNNCC	5 cut(s)	9, 50, 57, 237, 881
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	6 cut(s)	2, 15, 21, 43, 56, 598
BsrI	ACTGG	4 cut(s)	196, 200, 640, 881
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
Bst2UI	CCWGG	1 cut(s)	927
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	426, 435
BstF5I	GGATG	2 cut(s)	634, 757
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	6 cut(s)	10, 29, 51, 113, 606, 718
BstMBI	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 410, 431, 464
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	4 cut(s)	38, 39, 51, 925
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	74, 467, 983
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	2 cut(s)	7, 48
BstXI	CCANNNNNNTGG	2 cut(s)	271, 421
BstYI	RGATCY	2 cut(s)	7, 48
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	634, 757
BveI	ACCTGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	781
Cfr13I	GGNCC	2 cut(s)	16, 923
Cfr9I	CCCGGG	1 cut(s)	39
CsiI	ACCWGGT	1 cut(s)	925
CviAII	CATG	4 cut(s)	136, 271, 459, 650
DdeI	CTNAG	2 cut(s)	426, 435
DpnI	GATC	6 cut(s)	9, 28, 50, 112, 605, 717
DpnII	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	16, 923
Eco57I	CTGAAG	2 cut(s)	261, 842
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	925
FaeI	CATG	4 cut(s)	139, 274, 462, 653
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	4 cut(s)	135, 270, 458, 649
Fnu4HI	GCNGC	3 cut(s)	88, 456, 972
FokI	GGATG	2 cut(s)	641, 764
Fsp4HI	GCNGC	3 cut(s)	88, 456, 972
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	3 cut(s)	88, 456, 972
GsaI	CCCAGC	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	4 cut(s)	40, 53, 883, 1014
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	4 cut(s)	139, 274, 462, 653
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HinfI	GANTC	2 cut(s)	886, 1029
HpaII	CCGG	4 cut(s)	40, 53, 883, 1014
Hpy166II	GTNNAC	2 cut(s)	133, 899
Hpy188I	TCNGA	4 cut(s)	26, 48, 108, 115
Hpy188III	TCNNGA	4 cut(s)	239, 719, 890, 1026
Hpy8I	GTNNAC	2 cut(s)	133, 899
HpyAV	CCTTC	6 cut(s)	110, 154, 381, 385, 543, 716
HpyCH4V	TGCA	6 cut(s)	90, 211, 455, 494, 555, 982
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 410, 431, 464
HpyF3I	CTNAG	2 cut(s)	426, 435
Hsp92II	CATG	4 cut(s)	139, 274, 462, 653
HspAI	GCGC	1 cut(s)	779
Kzo9I	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
LmnI	GCTCC	2 cut(s)	27, 725
Lsp1109I	GCAGC	3 cut(s)	74, 467, 983
LweI	GCATC	3 cut(s)	78, 99, 400
MabI	ACCWGGT	1 cut(s)	925
MaeIII	GTNAC	2 cut(s)	355, 929
MalI	GATC	6 cut(s)	9, 28, 50, 112, 605, 717
MboI	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
MboII	GAAGA	6 cut(s)	254, 268, 332, 353, 484, 835
MflI	RGATCY	2 cut(s)	7, 48
MluCI	AATT	5 cut(s)	380, 499, 622, 705, 868
MnlI	CCTC	6 cut(s)	421, 432, 609, 693, 742, 898
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	713, 960
MspI	CCGG	4 cut(s)	40, 53, 883, 1014
MspR9I	CCNGG	4 cut(s)	40, 41, 53, 927
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	4 cut(s)	217, 410, 431, 464
NciI	CCSGG	3 cut(s)	40, 41, 53
NdeII	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
NlaIII	CATG	4 cut(s)	139, 274, 462, 653
NlaIV	GGNNCC	5 cut(s)	9, 50, 57, 237, 881
NmeAIII	GCCGAG	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	886, 1029
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	89, 457, 973
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	5 cut(s)	9, 50, 57, 237, 881
PspPI	GGNCC	2 cut(s)	16, 923
PsuI	RGATCY	2 cut(s)	7, 48
PvuII	CAGCTG	2 cut(s)	713, 960
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	3 cut(s)	88, 456, 972
Sau3AI	GATC	6 cut(s)	7, 26, 48, 110, 603, 715
Sau96I	GGNCC	2 cut(s)	16, 923
ScrFI	CCNGG	4 cut(s)	40, 41, 53, 927
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	3 cut(s)	78, 99, 400
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	2 cut(s)	16, 923
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	380, 499, 622, 705, 868
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	4 cut(s)	38, 39, 51, 925
TaqI	TCGA	3 cut(s)	99, 285, 378
TasI	AATT	5 cut(s)	380, 499, 622, 705, 868
TfiI	GAWTC	2 cut(s)	886, 1029
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TseI	GCWGC	3 cut(s)	87, 455, 971
TspDTI	ATGAA	4 cut(s)	152, 198, 333, 525
TspMI	CCCGGG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	16, 923
XapI	RAATTY	1 cut(s)	499
XmaI	CCCGGG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.