Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345997.1

Orthogroup ID

OG0029242

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1025

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

gtaggtgttgatggtggatttgacaacaatgaacctgaatatgaagaaactcacagtattgttttgttgcctgattatgtgactctaccatttccttctgttgagctgccagagaaggtaagattggcggttgacagcattttaatggctgagggtgcagagaagaaagaacaacttgcagcatggacagccgataagaagcaaacgagtgtgtatgcattgaatttgcaacaaattgacaatggtattgttgttccttcatctgggtggaaatgttccaagtgtgataaaagagacaacctttggatgaatctaactgatggaacgatcctttgtgggagaaaaaattgggatggtactggtggaaataaccatgccattgaacactataaggatacaggatttcctcttgctgtaaagctagggacaattacagctgatctggaagcagcagatgttttctcttatccggaggatgatagtgttttagatccacttttagcacaacatctggcattttttggcattgatttctcctcattacagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

4.51

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029242)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g16650
rosa_multiflora	Rmu_co8345997.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	2 cut(s)	322, 485
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	223, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	3 cut(s)	106, 421, 437
AluI	AGCT	3 cut(s)	106, 421, 437
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	322, 485
Aor13HI	TCCGGA	1 cut(s)	469
ApeKI	GCWGC	3 cut(s)	106, 179, 449
ApoI	RAATTY	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	93, 191, 461
BccI	CCATC	3 cut(s)	5, 314, 347
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	3 cut(s)	107, 180, 450
BlsI	GCNGC	3 cut(s)	108, 181, 451
Bpu10I	CCTNAGC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	3 cut(s)	312, 358, 481
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	3 cut(s)	93, 191, 461
BsgI	GTGCAG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	439
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	3 cut(s)	327, 439, 490
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	469
BspPI	GGATC	2 cut(s)	322, 485
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	327, 439, 490
Bst4CI	ACNGT	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	312, 358, 481
BstKTI	GATC	3 cut(s)	330, 442, 493
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	327, 439, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 188
BstV1I	GCAGC	3 cut(s)	93, 191, 461
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	312, 358, 481
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	183, 374
CviJI	RGCY	5 cut(s)	106, 149, 191, 421, 437
CviKI_1	RGCY	5 cut(s)	106, 149, 191, 421, 437
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	329, 441, 492
DpnII	GATC	3 cut(s)	327, 439, 490
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	2 cut(s)	186, 377
FaiI	YATR	6 cut(s)	42, 78, 184, 216, 375, 390
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	2 cut(s)	182, 373
Fnu4HI	GCNGC	3 cut(s)	107, 180, 450
FokI	GGATG	3 cut(s)	319, 365, 488
Fsp4HI	GCNGC	3 cut(s)	107, 180, 450
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	3 cut(s)	107, 180, 450
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	2 cut(s)	186, 377
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	82, 310
HpaII	CCGG	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	443, 470
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	105, 109, 267
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	158, 179, 218, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 188
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	186, 377
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	327, 439, 490
LpnPI	CCDG	9 cut(s)	48, 84, 123, 249, 345, 384, 428, 483, 497
Lsp1109I	GCAGC	3 cut(s)	93, 191, 461
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	329, 441, 492
MboI	GATC	3 cut(s)	327, 439, 490
MboII	GAAGA	2 cut(s)	56, 175
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	4 cut(s)	223, 234, 346, 429
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	145, 417, 466, 547
Mph1103I	ATGCAT	1 cut(s)	220
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	2 cut(s)	143, 265
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	155, 188
NdeII	GATC	3 cut(s)	327, 439, 490
NlaIII	CATG	2 cut(s)	186, 377
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	108, 181, 451
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	143, 265
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	3 cut(s)	107, 180, 450
Sau3AI	GATC	3 cut(s)	327, 439, 490
SchI	GAGTC	1 cut(s)	76
SetI	ASST	7 cut(s)	7, 37, 108, 120, 303, 423, 439
SmiMI	CAYNNNNRTG	2 cut(s)	143, 265
Sse9I	AATT	4 cut(s)	223, 234, 346, 429
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	4 cut(s)	223, 234, 346, 429
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	106, 179, 449
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	4 cut(s)	45, 57, 249, 323
XapI	RAATTY	1 cut(s)	223
XspI	CTAG	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.