Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0027797

Physical Location & Seq

Genomic Coordinates Forward (+)

17817601 .. 17821689

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCAGTTAACAAAGCTGGCGCATGGTTTGCTGTCTGGTAAATACTCCGTTCCTGTAACCGAGGAAAAAGATTGTACAAATGCCATTGCCCCTACAACAAAATTAAAACAGGAAGGGATACCTCCTCGTATGTTTAAGGCGGTTATAGCTGCCAGCCATCCTGAATTTTCTTCCATGAGACAACAGGATGCCTTGGAGTTCTTCCTTCATTTTCTTGACCAAGTTGAACGAGTTCATTCTGGAAGACCTGAAGTGGATCCTGCGAGGAGTTTTAAGTTTGGCATCAATAATGAAGATCGTATTATGTGTTCGTCTGGGAAAGTTGCTTACAATAGAAGGGTTGACTACATTCTCTCATTAAACATCCCACTTCATGCTGCCACTAATAAGGAAGAACTTGAAGCCTTTCAGAAATTGAAAGCAGAAAAGATTGCGGAAGGCAAGGAAGTATCCAGTGATGAGATTGTACGTCCAAGGGTTCCTCTAGAAGCATGCCTTGCAAGCTTTTCATCTCCCGAAGAGATACAGGATTTTTACAGCACTGGTTTGAAGGCCAAGACAACGGCTGTGAAGAGTGCAGGTCTAACTTCGTTCCCTGATTATCTGGTGTTGCACATGCGAAAGTTTGTAATGGAAGTGGGCTGGGTGCCGAAAAAACTTGATGTATATATAGATGTTCCTGATATCATAGACATCAGTCACATGCGCAGCAAGGGACTCCAACCTGGTGAAGAGTTGTTGCCGGAGGGTGTTTCAGGGGAAGAGGAGGAACCAAATGAGCCTGTTGCCGACGAGAGTATTGTTTTCCAGCTTGTTTCAATGGGTTTTAATAATTTTCACTGTCAGAAGGCTGCCATTAACACGTCAAATACTGGAGTGGAAGAGGCAATGAATTGGCTACTTTCTCACATGGATGATGCAGATATAGATGCTCCCATTTCTCAAGGGGGACAGTGTGCGGTTGACCAATCAAAAGTTGATATGTTGATTTCATTTGGTTTTCAAGAAGACATTGCTCGGAAGGCACTGAAAGCATCGGGTGGTGACATCGAGAAAGCCACGGATTGGATATTCAACAATCCTGATGCTTCTGCTTCATCGGACATGGATGCGACAACATCTGACACTGCACCTACTGCGATTGATGCTGGACTGCCTGATGGAGCAGGGAGATATAGACTCATTGGAATTGTAAGCCACATCGGAACATCTACTCAATGTGGTCATTATGTTGCTCACATCTTGAAAGATGGCAGATGGGTTATTTTCAATGACGACAAAGTTGGAGCTTCCGTTAATCCTCCCAAGGACATGGGATACCTTTACTTCTTTGAGAGACTTAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

450

Amino Acids

49.43

Weight (kDa)

5.02

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21160
pyrus_communis	pycom03g16660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	1065
AciI	CCGC	3 cut(s)	140, 434, 959
AclWI	GGATC	2 cut(s)	251, 264
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	76, 468
AfiI	CCNNNNNNNGG	1 cut(s)	1065
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	9 cut(s)	227, 401, 418, 550, 819, 1004, 1075, 1246, 1270
AjiI	CACGTC	1 cut(s)	864
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	5 cut(s)	16, 149, 504, 811, 1289
AluI	AGCT	5 cut(s)	16, 149, 504, 811, 1289
Alw26I	GTCTC	2 cut(s)	172, 1330
AlwI	GGATC	2 cut(s)	251, 264
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	149, 377, 708, 851
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	2 cut(s)	231, 405
AspLEI	GCGC	2 cut(s)	22, 708
AsuHPI	GGTGA	2 cut(s)	740, 1055
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	646
BbsI	GAAGAC	2 cut(s)	250, 1014
BbvI	GCAGC	4 cut(s)	136, 364, 720, 838
BccI	CCATC	4 cut(s)	165, 1154, 1244, 1251
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	3 cut(s)	111, 460, 1310
BcoDI	GTCTC	2 cut(s)	172, 1330
BfaI	CTAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	3 cut(s)	111, 460, 1310
BisI	GCNGC	4 cut(s)	150, 378, 709, 852
BlsI	GCNGC	4 cut(s)	151, 379, 710, 853
Bme1390I	CCNGG	1 cut(s)	726
BmgBI	CACGTC	1 cut(s)	864
BmiI	GGNNCC	4 cut(s)	258, 480, 648, 771
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
BoxI	GACNNNNGTC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	250, 1014
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	927
BsaJI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BsaXI	ACNNNNNCTCC	2 cut(s)	1278, 1308
Bsc4I	CCNNNNNNNGG	1 cut(s)	1065
Bse1I	ACTGG	3 cut(s)	453, 547, 877
Bse3DI	GCAATG	3 cut(s)	84, 894, 1011
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BseGI	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BseLI	CCNNNNNNNGG	1 cut(s)	1065
BseMI	GCAATG	3 cut(s)	84, 894, 1011
BseNI	ACTGG	3 cut(s)	453, 547, 877
BseRI	GAGGAG	3 cut(s)	114, 280, 779
BseXI	GCAGC	4 cut(s)	136, 364, 720, 838
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	2 cut(s)	597, 1113
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	729, 963
BslI	CCNNNNNNNGG	1 cut(s)	1065
BsmAI	GTCTC	2 cut(s)	172, 1330
BsmFI	GGGAC	2 cut(s)	729, 963
BsnI	GGCC	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	256, 295
BspACI	CCGC	3 cut(s)	140, 434, 959
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	4 cut(s)	258, 480, 648, 771
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	251, 264
BspT107I	GGYRCC	1 cut(s)	646
BsrDI	GCAATG	3 cut(s)	84, 894, 1011
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	453, 547, 877
BssECI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BssMI	GATC	2 cut(s)	256, 295
BssT1I	CCWWGG	3 cut(s)	192, 473, 1305
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	842, 954
Bst6I	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
BstAPI	GCANNNNNTGC	3 cut(s)	28, 497, 1136
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	18, 154, 493, 502
BstDEI	CTNAG	1 cut(s)	1340
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BstHHI	GCGC	2 cut(s)	22, 708
BstKTI	GATC	2 cut(s)	259, 298
BstMAI	GTCTC	2 cut(s)	172, 1330
BstMBI	GATC	2 cut(s)	256, 295
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	3 cut(s)	495, 619, 706
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	724
BstV1I	GCAGC	4 cut(s)	136, 364, 720, 838
BstV2I	GAAGAC	2 cut(s)	250, 1014
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	1312
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	3 cut(s)	111, 460, 1310
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	1059
BtrI	CACGTC	1 cut(s)	864
BtsCI	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	6 cut(s)	460, 540, 838, 959, 1025, 1125
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	4 cut(s)	18, 154, 493, 502
CfoI	GCGC	2 cut(s)	22, 708
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	75, 467
CviAII	CATG	9 cut(s)	23, 175, 374, 492, 616, 703, 910, 1105, 1312
CviQI	GTAC	2 cut(s)	75, 467
DdeI	CTNAG	1 cut(s)	1340
DpnI	GATC	2 cut(s)	258, 297
DpnII	GATC	2 cut(s)	256, 295
Eam1104I	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
EarI	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
Eco130I	CCWWGG	3 cut(s)	192, 473, 1305
Eco32I	GATATC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	3 cut(s)	192, 473, 1305
ErhI	CCWWGG	3 cut(s)	192, 473, 1305
FaeI	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	2 cut(s)	729, 963
FatI	CATG	9 cut(s)	22, 174, 373, 491, 615, 702, 909, 1104, 1311
Fnu4HI	GCNGC	4 cut(s)	150, 378, 709, 852
FokI	GGATG	5 cut(s)	144, 200, 350, 926, 1121
Fsp4HI	GCNGC	4 cut(s)	150, 378, 709, 852
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	707
GlaI	GCGC	2 cut(s)	21, 707
GluI	GCNGC	4 cut(s)	150, 378, 709, 852
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	743
HhaI	GCGC	2 cut(s)	22, 708
Hin1II	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
Hin6I	GCGC	2 cut(s)	20, 706
HinP1I	GCGC	2 cut(s)	20, 706
HincII	GTYRAC	3 cut(s)	9, 343, 964
HindII	GTYRAC	3 cut(s)	9, 343, 964
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	2 cut(s)	717, 1179
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	2 cut(s)	740, 1055
Hpy166II	GTNNAC	3 cut(s)	9, 343, 964
Hpy188I	TCNGA	6 cut(s)	411, 846, 1020, 1102, 1123, 1205
Hpy8I	GTNNAC	3 cut(s)	9, 343, 964
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	7 cut(s)	107, 215, 330, 431, 544, 841, 1015
HpyCH4III	ACNGT	2 cut(s)	842, 954
HpyCH4IV	ACGT	2 cut(s)	469, 863
HpyCH4V	TGCA	6 cut(s)	4, 500, 578, 613, 920, 1130
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
HpyF3I	CTNAG	1 cut(s)	1340
HpySE526I	ACGT	2 cut(s)	469, 863
Hsp92II	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
HspAI	GCGC	2 cut(s)	20, 706
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	256, 295
LmnI	GCTCC	3 cut(s)	937, 1163, 1286
Lsp1109I	GCAGC	4 cut(s)	136, 364, 720, 838
LweI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	469, 863
MaeIII	GTNAC	3 cut(s)	55, 698, 1043
MalI	GATC	2 cut(s)	258, 297
MboI	GATC	2 cut(s)	256, 295
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
MlyI	GAGTC	2 cut(s)	711, 1173
MmeI	TCCRAC	2 cut(s)	745, 1264
MroXI	GAANNNNTTC	2 cut(s)	231, 405
MseI	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
NdeII	GATC	2 cut(s)	256, 295
NlaIII	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
NlaIV	GGNNCC	4 cut(s)	258, 480, 648, 771
NmuCI	GTSAC	2 cut(s)	698, 1043
NsbI	TGCGCA	1 cut(s)	707
NspI	RCATGY	3 cut(s)	495, 619, 706
PaeI	GCATGC	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	231, 405
PflMI	CCANNNNNTGG	1 cut(s)	1065
PkrI	GCNGC	4 cut(s)	151, 379, 710, 853
PleI	GAGTC	2 cut(s)	711, 1173
PpsI	GAGTC	2 cut(s)	711, 1173
PshAI	GACNNNNGTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	4 cut(s)	258, 480, 648, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	76, 468
RsaNI	GTAC	2 cut(s)	75, 467
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
SatI	GCNGC	4 cut(s)	150, 378, 709, 852
Sau3AI	GATC	2 cut(s)	256, 295
SchI	GAGTC	2 cut(s)	711, 1173
ScrFI	CCNGG	1 cut(s)	726
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
SsiI	CCGC	3 cut(s)	140, 434, 959
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	3 cut(s)	192, 473, 1305
TaaI	ACNGT	2 cut(s)	842, 954
TaiI	ACGT	2 cut(s)	472, 866
TaqI	TCGA	1 cut(s)	1050
TasI	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
TatI	WGTACW	1 cut(s)	74
Tru1I	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
Tru9I	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
TscAI	CASTG	6 cut(s)	460, 547, 845, 959, 1032, 1132
TseFI	GTSAC	2 cut(s)	698, 1043
TseI	GCWGC	4 cut(s)	149, 377, 708, 851
Tsp45I	GTSAC	2 cut(s)	698, 1043
TspDTI	ATGAA	8 cut(s)	197, 224, 306, 362, 498, 905, 981, 1086
TspGWI	ACGGA	3 cut(s)	37, 1076, 1282
TspRI	CASTG	6 cut(s)	460, 547, 845, 959, 1032, 1132
Van91I	CCANNNNNTGG	1 cut(s)	1065
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	3 cut(s)	495, 619, 706
XmnI	GAANNNNTTC	2 cut(s)	231, 405
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.