Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0027797

Physical Location & Seq

Genomic Coordinates Forward (+)

17817601 .. 17821689

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCAGTTAACAAAGCTGGCGCATGGTTTGCTGTCTGGTAAATACTCCGTTCCTGTAACCGAGGAAAAAGATTGTACAAATGCCATTGCCCCTACAACAAAATTAAAACAGGAAGGGATACCTCCTCGTATGTTTAAGGCGGTTATAGCTGCCAGCCATCCTGAATTTTCTTCCATGAGACAACAGGATGCCTTGGAGTTCTTCCTTCATTTTCTTGACCAAGTTGAACGAGTTCATTCTGGAAGACCTGAAGTGGATCCTGCGAGGAGTTTTAAGTTTGGCATCAATAATGAAGATCGTATTATGTGTTCGTCTGGGAAAGTTGCTTACAATAGAAGGGTTGACTACATTCTCTCATTAAACATCCCACTTCATGCTGCCACTAATAAGGAAGAACTTGAAGCCTTTCAGAAATTGAAAGCAGAAAAGATTGCGGAAGGCAAGGAAGTATCCAGTGATGAGATTGTACGTCCAAGGGTTCCTCTAGAAGCATGCCTTGCAAGCTTTTCATCTCCCGAAGAGATACAGGATTTTTACAGCACTGGTTTGAAGGCCAAGACAACGGCTGTGAAGAGTGCAGGTCTAACTTCGTTCCCTGATTATCTGGTGTTGCACATGCGAAAGTTTGTAATGGAAGTGGGCTGGGTGCCGAAAAAACTTGATGTATATATAGATGTTCCTGATATCATAGACATCAGTCACATGCGCAGCAAGGGACTCCAACCTGGTGAAGAGTTGTTGCCGGAGGGTGTTTCAGGGGAAGAGGAGGAACCAAATGAGCCTGTTGCCGACGAGAGTATTGTTTTCCAGCTTGTTTCAATGGGTTTTAATAATTTTCACTGTCAGAAGGCTGCCATTAACACGTCAAATACTGGAGTGGAAGAGGCAATGAATTGGCTACTTTCTCACATGGATGATGCAGATATAGATGCTCCCATTTCTCAAGGGGGACAGTGTGCGGTTGACCAATCAAAAGTTGATATGTTGATTTCATTTGGTTTTCAAGAAGACATTGCTCGGAAGGCACTGAAAGCATCGGGTGGTGACATCGAGAAAGCCACGGATTGGATATTCAACAATCCTGATGCTTCTGCTTCATCGGACATGGATGCGACAACATCTGACACTGCACCTACTGCGATTGATGCTGGACTGCCTGATGGAGCAGGGAGATATAGACTCATTGGAATTGTAAGCCACATCGGAACATCTACTCAATGTGGTCATTATGTTGCTCACATCTTGAAAGATGGCAGATGGGTTATTTTCAATGACGACAAAGTTGGAGCTTCCGTTAATCCTCCCAAGGACATGGGATACCTTTACTTCTTTGAGAGACTTAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

450

Amino Acids

49.43

Weight (kDa)

5.02

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	27 - 444	2.8e-33	Ubiquitin carboxyl-terminal hydrolase
UBA_7	PF22562	264 - 311	6.7e-19	UBA-like domain
UBA	PF00627	264 - 300	2.9e-07	UBA/TS-N domain
UBA	PF00627	321 - 357	2.3e-09	UBA/TS-N domain
UBA_7	PF22562	322 - 364	3.8e-11	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21160
pyrus_communis	pycom03g16660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	1065
AciI	CCGC	3 cut(s)	140, 434, 959
AclWI	GGATC	2 cut(s)	251, 264
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	76, 468
AfiI	CCNNNNNNNGG	1 cut(s)	1065
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	9 cut(s)	227, 401, 418, 550, 819, 1004, 1075, 1246, 1270
AjiI	CACGTC	1 cut(s)	864
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	5 cut(s)	16, 149, 504, 811, 1289
AluI	AGCT	5 cut(s)	16, 149, 504, 811, 1289
Alw26I	GTCTC	2 cut(s)	172, 1330
AlwI	GGATC	2 cut(s)	251, 264
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	149, 377, 708, 851
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	2 cut(s)	231, 405
AspLEI	GCGC	2 cut(s)	22, 708
AsuHPI	GGTGA	2 cut(s)	740, 1055
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	646
BbsI	GAAGAC	2 cut(s)	250, 1014
BbvI	GCAGC	4 cut(s)	136, 364, 720, 838
BccI	CCATC	4 cut(s)	165, 1154, 1244, 1251
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	3 cut(s)	111, 460, 1310
BcoDI	GTCTC	2 cut(s)	172, 1330
BfaI	CTAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	3 cut(s)	111, 460, 1310
BisI	GCNGC	4 cut(s)	150, 378, 709, 852
BlsI	GCNGC	4 cut(s)	151, 379, 710, 853
Bme1390I	CCNGG	1 cut(s)	726
BmgBI	CACGTC	1 cut(s)	864
BmiI	GGNNCC	4 cut(s)	258, 480, 648, 771
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
BoxI	GACNNNNGTC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	250, 1014
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	927
BsaJI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BsaXI	ACNNNNNCTCC	2 cut(s)	1278, 1308
Bsc4I	CCNNNNNNNGG	1 cut(s)	1065
Bse1I	ACTGG	3 cut(s)	453, 547, 877
Bse3DI	GCAATG	3 cut(s)	84, 894, 1011
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BseGI	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BseLI	CCNNNNNNNGG	1 cut(s)	1065
BseMI	GCAATG	3 cut(s)	84, 894, 1011
BseNI	ACTGG	3 cut(s)	453, 547, 877
BseRI	GAGGAG	3 cut(s)	114, 280, 779
BseXI	GCAGC	4 cut(s)	136, 364, 720, 838
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	2 cut(s)	597, 1113
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	729, 963
BslI	CCNNNNNNNGG	1 cut(s)	1065
BsmAI	GTCTC	2 cut(s)	172, 1330
BsmFI	GGGAC	2 cut(s)	729, 963
BsnI	GGCC	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	256, 295
BspACI	CCGC	3 cut(s)	140, 434, 959
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	4 cut(s)	258, 480, 648, 771
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	251, 264
BspT107I	GGYRCC	1 cut(s)	646
BsrDI	GCAATG	3 cut(s)	84, 894, 1011
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	453, 547, 877
BssECI	CCNNGG	5 cut(s)	60, 192, 473, 1059, 1305
BssMI	GATC	2 cut(s)	256, 295
BssT1I	CCWWGG	3 cut(s)	192, 473, 1305
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	842, 954
Bst6I	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
BstAPI	GCANNNNNTGC	3 cut(s)	28, 497, 1136
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	18, 154, 493, 502
BstDEI	CTNAG	1 cut(s)	1340
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BstHHI	GCGC	2 cut(s)	22, 708
BstKTI	GATC	2 cut(s)	259, 298
BstMAI	GTCTC	2 cut(s)	172, 1330
BstMBI	GATC	2 cut(s)	256, 295
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	3 cut(s)	495, 619, 706
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	724
BstV1I	GCAGC	4 cut(s)	136, 364, 720, 838
BstV2I	GAAGAC	2 cut(s)	250, 1014
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	1312
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	3 cut(s)	111, 460, 1310
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	1059
BtrI	CACGTC	1 cut(s)	864
BtsCI	GGATG	5 cut(s)	157, 193, 363, 919, 1114
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	6 cut(s)	460, 540, 838, 959, 1025, 1125
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	4 cut(s)	18, 154, 493, 502
CfoI	GCGC	2 cut(s)	22, 708
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	75, 467
CviAII	CATG	9 cut(s)	23, 175, 374, 492, 616, 703, 910, 1105, 1312
CviQI	GTAC	2 cut(s)	75, 467
DdeI	CTNAG	1 cut(s)	1340
DpnI	GATC	2 cut(s)	258, 297
DpnII	GATC	2 cut(s)	256, 295
Eam1104I	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
EarI	CTCTTC	5 cut(s)	513, 566, 726, 756, 876
Eco130I	CCWWGG	3 cut(s)	192, 473, 1305
Eco32I	GATATC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	3 cut(s)	192, 473, 1305
ErhI	CCWWGG	3 cut(s)	192, 473, 1305
FaeI	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	2 cut(s)	729, 963
FatI	CATG	9 cut(s)	22, 174, 373, 491, 615, 702, 909, 1104, 1311
Fnu4HI	GCNGC	4 cut(s)	150, 378, 709, 852
FokI	GGATG	5 cut(s)	144, 200, 350, 926, 1121
Fsp4HI	GCNGC	4 cut(s)	150, 378, 709, 852
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	707
GlaI	GCGC	2 cut(s)	21, 707
GluI	GCNGC	4 cut(s)	150, 378, 709, 852
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	743
HhaI	GCGC	2 cut(s)	22, 708
Hin1II	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
Hin6I	GCGC	2 cut(s)	20, 706
HinP1I	GCGC	2 cut(s)	20, 706
HincII	GTYRAC	3 cut(s)	9, 343, 964
HindII	GTYRAC	3 cut(s)	9, 343, 964
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	2 cut(s)	717, 1179
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	2 cut(s)	740, 1055
Hpy166II	GTNNAC	3 cut(s)	9, 343, 964
Hpy188I	TCNGA	6 cut(s)	411, 846, 1020, 1102, 1123, 1205
Hpy8I	GTNNAC	3 cut(s)	9, 343, 964
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	7 cut(s)	107, 215, 330, 431, 544, 841, 1015
HpyCH4III	ACNGT	2 cut(s)	842, 954
HpyCH4IV	ACGT	2 cut(s)	469, 863
HpyCH4V	TGCA	6 cut(s)	4, 500, 578, 613, 920, 1130
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
HpyF3I	CTNAG	1 cut(s)	1340
HpySE526I	ACGT	2 cut(s)	469, 863
Hsp92II	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
HspAI	GCGC	2 cut(s)	20, 706
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	256, 295
LmnI	GCTCC	3 cut(s)	937, 1163, 1286
Lsp1109I	GCAGC	4 cut(s)	136, 364, 720, 838
LweI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	469, 863
MaeIII	GTNAC	3 cut(s)	55, 698, 1043
MalI	GATC	2 cut(s)	258, 297
MboI	GATC	2 cut(s)	256, 295
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
MlyI	GAGTC	2 cut(s)	711, 1173
MmeI	TCCRAC	2 cut(s)	745, 1264
MroXI	GAANNNNTTC	2 cut(s)	231, 405
MseI	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	8 cut(s)	28, 146, 497, 501, 1022, 1031, 1136, 1145
NdeII	GATC	2 cut(s)	256, 295
NlaIII	CATG	9 cut(s)	26, 178, 377, 495, 619, 706, 913, 1108, 1315
NlaIV	GGNNCC	4 cut(s)	258, 480, 648, 771
NmuCI	GTSAC	2 cut(s)	698, 1043
NsbI	TGCGCA	1 cut(s)	707
NspI	RCATGY	3 cut(s)	495, 619, 706
PaeI	GCATGC	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	231, 405
PflMI	CCANNNNNTGG	1 cut(s)	1065
PkrI	GCNGC	4 cut(s)	151, 379, 710, 853
PleI	GAGTC	2 cut(s)	711, 1173
PpsI	GAGTC	2 cut(s)	711, 1173
PshAI	GACNNNNGTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	4 cut(s)	258, 480, 648, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	76, 468
RsaNI	GTAC	2 cut(s)	75, 467
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
SatI	GCNGC	4 cut(s)	150, 378, 709, 852
Sau3AI	GATC	2 cut(s)	256, 295
SchI	GAGTC	2 cut(s)	711, 1173
ScrFI	CCNGG	1 cut(s)	726
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	8 cut(s)	178, 291, 907, 919, 1043, 1075, 1099, 1135
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
SsiI	CCGC	3 cut(s)	140, 434, 959
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	3 cut(s)	192, 473, 1305
TaaI	ACNGT	2 cut(s)	842, 954
TaiI	ACGT	2 cut(s)	472, 866
TaqI	TCGA	1 cut(s)	1050
TasI	AATT	6 cut(s)	101, 164, 413, 832, 892, 1188
TatI	WGTACW	1 cut(s)	74
Tru1I	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
Tru9I	TTAA	9 cut(s)	8, 104, 135, 273, 359, 828, 858, 1296, 1348
TscAI	CASTG	6 cut(s)	460, 547, 845, 959, 1032, 1132
TseFI	GTSAC	2 cut(s)	698, 1043
TseI	GCWGC	4 cut(s)	149, 377, 708, 851
Tsp45I	GTSAC	2 cut(s)	698, 1043
TspDTI	ATGAA	8 cut(s)	197, 224, 306, 362, 498, 905, 981, 1086
TspGWI	ACGGA	3 cut(s)	37, 1076, 1282
TspRI	CASTG	6 cut(s)	460, 547, 845, 959, 1032, 1132
Van91I	CCANNNNNTGG	1 cut(s)	1065
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	3 cut(s)	495, 619, 706
XmnI	GAANNNNTTC	2 cut(s)	231, 405
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.