pycom03g17030

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
18166894 .. 18167100
207 bp
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UTR
Exon/CDS
Intron
pycom03g17030.1

Sequence Viewer

Length: 207 bp
ATGGTTTGCTTTTGTTTCCTGGTAGACCAGAGGAGGAAGGTGTGGAGGAACAAGCCGGTGGCTGGGACATGTTCAAGATGTGGGTGTGGAGCAAGCGTCGCTGACATAAAGACTTCGACTAGGTTTTGCTATATTCCAGTTTACTGGAAATCTTGGAAAGCAATCATGTGTACTTTTTGTGGAGCCATTCTCAAATCTTATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.81

Weight (kDa)

9.6

Isoelectric Point (pI)

23.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52855
malus_domestica MD03G1221400.v1.1 MD11G1238900.v1.1
prunus_persica Prupe.4G187900_v2.0.a1 Prupe.4G187900_v2.0.a1
pyrus_communis pycom03g17030 pycom11g21040
rosa_chinensis RchiOBHm_Chr5g0035051
rosa_roxburghii Rroxscaffold_1G00045360
rosa_rugosa Rorug05G0149600
rosa_wichuraiana Rw5G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 20
BfaI CTAG 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 137, 149
BseBI CCWGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 137, 149
BseRI GAGGAG 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 2 cut(s) 137, 149
BssAI RCCGGY 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 69, 166
CviJI RGCY 3 cut(s) 55, 62, 185
CviKI_1 RGCY 3 cut(s) 55, 62, 185
CviQI GTAC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 72, 169
FaiI YATR 5 cut(s) 70, 107, 132, 167, 201
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 68, 165
FblI GTMKAC 1 cut(s) 24
FspBI CTAG 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 66
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 72, 169
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 25, 142, 171
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 3 cut(s) 25, 142, 171
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 72, 169
LmnI GCTCC 2 cut(s) 89, 182
LpnPI CCDG 7 cut(s) 5, 32, 41, 48, 69, 130, 150
MaeI CTAG 1 cut(s) 120
MnlI CCTC 3 cut(s) 24, 27, 39
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 72, 169
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PscI ACATGT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 20
SetI ASST 2 cut(s) 42, 125
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 170
XceI RCATGY 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.