Rroxscaffold_1G00045360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
64351700 .. 64351906
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045360.1

Sequence Viewer

Length: 207 bp
ATGGTTTGCTTTTGCTTTCTAGTAGACCAGAGGAGGAAGGTGTGGCGGAGCAAGCCGGTGGCGGGGTCATGTTCGCGGTGCGGGCGTGGAGCAAGCGTGGCCGATATTAGAACTTCGACGAGGTTTTGTTACGTTCCCTTCTACTGGAAATCTTGGAAAGCTGTTATGTGTACCTTCTGTGGAGCTATTCTTAGATCTTACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.9

Weight (kDa)

10.01

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52855
malus_domestica MD03G1221400.v1.1 MD11G1238900.v1.1
prunus_persica Prupe.4G187900_v2.0.a1 Prupe.4G187900_v2.0.a1
pyrus_communis pycom03g17030 pycom11g21040
rosa_chinensis RchiOBHm_Chr5g0035051
rosa_roxburghii Rroxscaffold_1G00045360
rosa_rugosa Rorug05G0149600
rosa_wichuraiana Rw5G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 76
AciI CCGC 4 cut(s) 46, 62, 76, 81
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 62, 144
AluBI AGCT 2 cut(s) 161, 185
AluI AGCT 2 cut(s) 161, 185
AoxI GGCC 1 cut(s) 99
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 144
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 62, 144
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 62, 144
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 4 cut(s) 46, 62, 76, 81
BspANI GGCC 1 cut(s) 101
BspFNI CGCG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 53, 83, 94
BstDEI CTNAG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 3 cut(s) 52, 82, 98
BstUI CGCG 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 53, 83, 94
Cfr10I RCCGGY 1 cut(s) 55
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 69
CviJI RGCY 4 cut(s) 55, 101, 161, 185
CviKI_1 RGCY 4 cut(s) 55, 101, 161, 185
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 99
EciI GGCGGA 1 cut(s) 61
FaeI CATG 1 cut(s) 72
FaiI YATR 2 cut(s) 70, 167
FatI CATG 1 cut(s) 68
FauI CCCGC 2 cut(s) 55, 74
FblI GTMKAC 1 cut(s) 24
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 72
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 25, 171
Hpy8I GTNNAC 2 cut(s) 25, 171
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 31, 148, 184
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 82, 98
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 72
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 3 cut(s) 48, 89, 182
LpnPI CCDG 3 cut(s) 41, 69, 130
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MflI RGATCY 1 cut(s) 194
MnlI CCTC 3 cut(s) 24, 27, 114
MspI CCGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 52, 82, 98
NdeII GATC 1 cut(s) 194
NlaIII CATG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 194
SetI ASST 6 cut(s) 42, 125, 135, 163, 176, 187
SsiI CCGC 4 cut(s) 46, 62, 76, 81
SspMI CTAG 1 cut(s) 20
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.