Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012347

Physical Location & Seq

Genomic Coordinates Reverse (-)

19724999 .. 19726903

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCTCTGTCGACAAGGCTGCGACGCCCTCAGCCGTCCGATGATCCTTCATCATCATCGCCGTCGTCGTCATCTTACTCGAAAGTCGACAAGCAAGGGAAATCGGACGGCGGCGTCGACAAAGGGTTGGGGTGGTTCTTTCCGTTGGTGGCTCTGGGAATGCTGAGGTACATGAGCGCCACATCAAACATCATACACGACTGCGACGAGGTCTTCAATTATTGGGAACCTCTCCATTTCCTTCTCTACAAATCTGGCTTCCAAACTTGGGAATACAGTTCACAGTTTGCACTTCGGTCATATTTGTACATTCTTTTCCATGAATTGGTGGGTCAGCCTGCTTCCTGGTTGTTTGCTGAGGAAAAAGTGAGAGTATTCTACGCTGTTAGAATCTTTCTTGGTCTCCTTTCTGTTATCACTGACACTGTCCTGGTAGTTGCTCTTTCAAGAAAGTATGGAAAACGCCTTGCTTCTTACACACTTGCAATGCTATGCTTAACCAGCGGTTGTTTTTTCGCTAGCACAAGTTTCTTGCCAAGCTCGTTCTCCATGTATGCCATGTCTCTTTCATCTGGTTTATTTCTGCTTGATAAATACGCCATGGCAGTTGCAGTTGCAGCCGTGGGTGTAATCCTTGGTTGGCCATTCTCAATCTTGGCTTTTTTGCCAGTCACATTCTACTCTCTAGCTAGAAGATTCAAACAAGCATTTCTTGCGGGGGCCGCCATATCTGTTGCTCTTCTTGTATCCTCGGTTCTCGTTGATCGATCATTACTACTACAGCAGATGGACATCATCCGTGTTAAATCTGTTGATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006490 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

274

Amino Acids

30.34

Weight (kDa)

9.18

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16900
fragaria_vesca	FvH4_3g18450 FvH4_3g18450 FvH4_3g18450
malus_domestica	MD03G1241900.v1.1 MD11G1261800.v1.1
prunus_persica	Prupe.4G166500_v2.0.a1
pyrus_communis	pycom03g18900 pycom11g23080
rosa_chinensis	RchiOBHm_Chr5g0031201
rosa_laevigata	RLG00000033289
rosa_multiflora	Rmu_sc0004014.1_g000016
rosa_roxburghii	Rroxscaffold_1G00049080
rosa_rugosa	Rorug05G0122800
rosa_samantha	Rh5AG216500 Rh5BG215800 Rh5CG239400 Rh5DG220700
rosa_wichuraiana	Rw5G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	3 cut(s)	11, 87, 117
AciI	CCGC	4 cut(s)	111, 504, 716, 723
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	641
AcyI	GRCGYC	2 cut(s)	25, 114
AfaI	GTAC	2 cut(s)	170, 308
AfiI	CCNNNNNNNGG	2 cut(s)	268, 325
AgsI	TTSAA	3 cut(s)	217, 447, 700
AjnI	CCWGG	2 cut(s)	344, 429
AluBI	AGCT	2 cut(s)	540, 689
AluI	AGCT	2 cut(s)	540, 689
Alw26I	GTCTC	3 cut(s)	9, 407, 567
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	2 cut(s)	641, 720
ApeKI	GCWGC	2 cut(s)	19, 617
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	720
AsuNHI	GCTAGC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	205
BbvCI	CCTCAGC	3 cut(s)	30, 164, 357
BbvI	GCAGC	2 cut(s)	6, 629
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	4 cut(s)	19, 46, 124, 605
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	346, 431
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	9, 407, 567
BfaI	CTAG	3 cut(s)	519, 686, 690
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	4 cut(s)	20, 112, 618, 723
BlsI	GCNGC	4 cut(s)	21, 113, 619, 724
Bme1390I	CCNGG	2 cut(s)	346, 431
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	2 cut(s)	228, 721
BmrFI	CCNGG	2 cut(s)	346, 431
BmtI	GCTAGC	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	3 cut(s)	30, 164, 357
Bsa29I	ATCGAT	1 cut(s)	766
BsaBI	GATNNNNATC	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	25, 114
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	4 cut(s)	600, 621, 634, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 325
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	346, 431
BseCI	ATCGAT	1 cut(s)	766
BseDI	CCNNGG	4 cut(s)	600, 621, 634, 750
BseGI	GGATG	1 cut(s)	795
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	2 cut(s)	268, 325
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	44, 155, 348
BseNI	ACTGG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	6, 629
BshFI	GGCC	2 cut(s)	643, 722
BshVI	ATCGAT	1 cut(s)	766
BslI	CCNNNNNNNGG	2 cut(s)	268, 325
BsmAI	GTCTC	3 cut(s)	9, 407, 567
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	643, 722
Bso31I	GGTCTC	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	43, 763, 767, 814
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	4 cut(s)	111, 504, 716, 723
BspANI	GGCC	2 cut(s)	643, 722
BspCNI	CTCAG	3 cut(s)	43, 156, 349
BspDI	ATCGAT	1 cut(s)	766
BspLI	GGNNCC	2 cut(s)	228, 721
BspOI	GCTAGC	1 cut(s)	522
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	4 cut(s)	600, 621, 634, 750
BssMI	GATC	4 cut(s)	43, 763, 767, 814
BssNI	GRCGYC	2 cut(s)	25, 114
BssT1I	CCWWGG	2 cut(s)	600, 634
Bst2UI	CCWGG	2 cut(s)	346, 431
Bst4CI	ACNGT	3 cut(s)	278, 285, 427
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	2 cut(s)	25, 114
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	339, 520
BstDEI	CTNAG	3 cut(s)	30, 164, 357
BstDSI	CCRYGG	2 cut(s)	600, 621
BstF5I	GGATG	1 cut(s)	795
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	46, 766, 770, 817
BstMAI	GTCTC	3 cut(s)	9, 407, 567
BstMBI	GATC	4 cut(s)	43, 763, 767, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	501, 617, 713, 722
BstNI	CCWGG	2 cut(s)	346, 431
BstSCI	CCNGG	2 cut(s)	344, 429
BstSFI	CTRYAG	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	6, 629
BstV2I	GAAGAC	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	766
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	643, 722
BsuTUI	ATCGAT	1 cut(s)	766
BtgI	CCRYGG	2 cut(s)	600, 621
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	417, 423
Cac8I	GCNNGC	2 cut(s)	339, 520
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	766
CseI	GACGC	2 cut(s)	33, 103
Csp6I	GTAC	2 cut(s)	169, 307
CviAII	CATG	5 cut(s)	172, 320, 550, 559, 601
CviQI	GTAC	2 cut(s)	169, 307
DdeI	CTNAG	3 cut(s)	30, 164, 357
DpnI	GATC	4 cut(s)	45, 765, 769, 816
DpnII	GATC	4 cut(s)	43, 763, 767, 814
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco130I	CCWWGG	2 cut(s)	600, 634
Eco31I	GGTCTC	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	344, 429
EcoT14I	CCWWGG	2 cut(s)	600, 634
ErhI	CCWWGG	2 cut(s)	600, 634
FaeI	CATG	5 cut(s)	175, 323, 553, 562, 604
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	5 cut(s)	171, 319, 549, 558, 600
FauI	CCCGC	1 cut(s)	709
FblI	GTMKAC	3 cut(s)	11, 87, 117
Fnu4HI	GCNGC	4 cut(s)	20, 112, 618, 723
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	4 cut(s)	20, 112, 618, 723
FspBI	CTAG	3 cut(s)	519, 686, 690
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	20, 112, 618, 723
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	643, 722
HgaI	GACGC	2 cut(s)	33, 103
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	2 cut(s)	25, 114
Hin1II	CATG	5 cut(s)	175, 323, 553, 562, 604
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	3 cut(s)	12, 88, 118
HindII	GTYRAC	3 cut(s)	12, 88, 118
HinfI	GANTC	2 cut(s)	390, 696
Hpy166II	GTNNAC	4 cut(s)	12, 88, 118, 281
Hpy188I	TCNGA	2 cut(s)	40, 106
Hpy188III	TCNNGA	1 cut(s)	447
Hpy8I	GTNNAC	4 cut(s)	12, 88, 118, 281
Hpy99I	CGWCG	5 cut(s)	27, 67, 70, 119, 209
HpyAV	CCTTC	2 cut(s)	57, 251
HpyCH4III	ACNGT	3 cut(s)	278, 285, 427
HpyCH4V	TGCA	4 cut(s)	290, 485, 611, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	501, 617, 713, 722
HpyF3I	CTNAG	3 cut(s)	30, 164, 357
Hsp92I	GRCGYC	2 cut(s)	25, 114
Hsp92II	CATG	5 cut(s)	175, 323, 553, 562, 604
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	43, 763, 767, 814
LguI	GCTCTTC	1 cut(s)	744
Lsp1109I	GCAGC	2 cut(s)	6, 629
MaeI	CTAG	3 cut(s)	519, 686, 690
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	4 cut(s)	45, 765, 769, 816
MboI	GATC	4 cut(s)	43, 763, 767, 814
MboII	GAAGA	3 cut(s)	205, 705, 731
MlsI	TGGCCA	1 cut(s)	643
MluCI	AATT	2 cut(s)	217, 323
MluNI	TGGCCA	1 cut(s)	643
MnlI	CCTC	6 cut(s)	39, 159, 202, 240, 352, 760
Mox20I	TGGCCA	1 cut(s)	643
MscI	TGGCCA	1 cut(s)	643
MseI	TTAA	2 cut(s)	497, 804
Msp20I	TGGCCA	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	346, 431
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	346, 431
MwoI	GCNNNNNNNGC	4 cut(s)	501, 617, 713, 722
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	4 cut(s)	43, 763, 767, 814
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	5 cut(s)	175, 323, 553, 562, 604
NlaIV	GGNNCC	2 cut(s)	228, 721
NmuCI	GTSAC	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 114, 204
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	390, 696
PflFI	GACNNNGTC	2 cut(s)	209, 425
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	21, 113, 619, 724
Psp6I	CCWGG	2 cut(s)	344, 429
PspGI	CCWGG	2 cut(s)	344, 429
PspN4I	GGNNCC	2 cut(s)	228, 721
PspPI	GGNCC	1 cut(s)	720
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PsyI	GACNNNGTC	2 cut(s)	209, 425
RsaI	GTAC	2 cut(s)	170, 308
RsaNI	GTAC	2 cut(s)	169, 307
SalI	GTCGAC	3 cut(s)	10, 86, 116
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	497, 804
SatI	GCNGC	4 cut(s)	20, 112, 618, 723
Sau3AI	GATC	4 cut(s)	43, 763, 767, 814
Sau96I	GGNCC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	346, 431
SetI	ASST	5 cut(s)	170, 213, 232, 542, 691
SfcI	CTRYAG	1 cut(s)	779
Sse9I	AATT	2 cut(s)	217, 323
SsiI	CCGC	4 cut(s)	111, 504, 716, 723
SspMI	CTAG	3 cut(s)	519, 686, 690
StyD4I	CCNGG	2 cut(s)	344, 429
StyI	CCWWGG	2 cut(s)	600, 634
TaaI	ACNGT	3 cut(s)	278, 285, 427
TaqI	TCGA	5 cut(s)	11, 80, 87, 117, 766
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	217, 323
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	2 cut(s)	114, 725
TfiI	GAWTC	2 cut(s)	390, 696
Tru1I	TTAA	2 cut(s)	497, 804
Tru9I	TTAA	2 cut(s)	497, 804
TscAI	CASTG	2 cut(s)	424, 430
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	2 cut(s)	19, 617
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	3 cut(s)	39, 336, 558
TspGWI	ACGGA	2 cut(s)	132, 788
TspRI	CASTG	2 cut(s)	424, 430
Tth111I	GACNNNGTC	2 cut(s)	209, 425
Van91I	CCANNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	3 cut(s)	11, 87, 117
XspI	CTAG	3 cut(s)	519, 686, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.