Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012347

Physical Location & Seq

Genomic Coordinates Forward (+)

25515986 .. 25520220

Gene Structure 4235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG216500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCCCTTTCAACGAGGCAGAGACGTCCTCAACCGTCCGATCCTTCATCTTCATCGTCGCCGTCGCCGTCTGTATCCTACACCAAGGTCGACAAGCAAGGCAAATCAGGTGGCGTCGGGGTTGAGAAGGGCTTCAGTTGGTTCGTTCCGCTCTTCGCTTTGGGTATGCTAAGATACATGAGCGCCACATCCAACATTATTCACGACTGCGATGAGGTCTTTAACTATTGGGAGCCTCTGCATTACCTTCTCTACAAATCTGGCTTCCAAACTTGGGAATACAGTTCTCAGTTTGCACTCAGGTCGTATTTGTACATTCTTTTCCATGAGTTGGTGGGTCGACCGGCTTCCTTGTTGTTTGGAGAGGAAAAAGTGAGGGTATTTTATGCTGTCAGGATCTTTCTTGGTCTCATTTCTGTTATTACTGAAACCATTCTGGTTTATGCTCTGTCAAGAAAGTACGGAAAACGTCTTGCCTCGTATACACTTGCCATGCTATGCTTAACCAGCGGTTGTTTCTTTGCTAGTACAAGTTTCTTGCCAAGTTCGTTCTCTATGTACGCCGTCTCTCTTTCATCGGGGTTGTTTCTTCTAGACAAACCTGCCATGGCAGTTTCAGTTGCAGCTGCTGGTGTAATCCTTGGCTGGCCTTTCTCAATCTTGGTTTTTCTGCCCCTCACATTCTATTCTCTAGCTAGAAAATTCAAACAAGCATTTATTGCTGGGGCTGCCACCTCTATTGTTGTTCTTGCACTGTCGGTTCTCGTTGACTACAGCTACTACAGCAGATGGACATCATCTGTGTTAAACTTATTGATCTACAATGTTGCAGGAGGTGGTGAGAGCCATTTGTATGGAACCGAAGGACCGCTCTTTTATCTACGGAATGGGTTTAACAATTTTAACTTCTGTTTTGTACTTGCATTGCTGTTTCTGGTAATGCTGCCAATCGCAAAGAAAAAATATGCCCCTGACCTGCTGATTGTGGTCTCGCCTGTATATATTTGGTTGGTGTTTATGTCTCTGCAGCCACATAAAGAAGAAAGGTTTCTTTATCCAATATATCCACTAATTTGTGTCGCTGCTTCAGCTGTTATTGAGAGCTTTCCTGATGTTTTTCGATCCAAGTATAATCCCCATGACAATTCTATATTGGTTGTGGTGAGTATATCCTATATTCCATCTAACTTTGTTATATTACCCTTACCAACTGCTTCTCTATGGCATCACTATTGTTGTTTGTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006490 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

416

Amino Acids

46.67

Weight (kDa)

9.05

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	52 - 388	1.7e-100	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16900
fragaria_vesca	FvH4_3g18450 FvH4_3g18450 FvH4_3g18450
malus_domestica	MD03G1241900.v1.1 MD11G1261800.v1.1
prunus_persica	Prupe.4G166500_v2.0.a1
pyrus_communis	pycom03g18900 pycom11g23080
rosa_chinensis	RchiOBHm_Chr5g0031201
rosa_laevigata	RLG00000033289
rosa_multiflora	Rmu_sc0004014.1_g000016
rosa_roxburghii	Rroxscaffold_1G00049080
rosa_rugosa	Rorug05G0122800
rosa_samantha	Rh5AG216500 Rh5BG215800 Rh5CG239400 Rh5DG220700
rosa_wichuraiana	Rw5G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	28
Acc36I	ACCTGC	2 cut(s)	610, 984
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	2 cut(s)	151, 871
AccI	GTMKAC	3 cut(s)	90, 340, 482
AciI	CCGC	3 cut(s)	149, 510, 869
AclWI	GGATC	3 cut(s)	35, 404, 1116
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	2 cut(s)	118, 1071
AcyI	GRCGYC	2 cut(s)	25, 114
AfaI	GTAC	5 cut(s)	314, 461, 529, 560, 918
AfiI	CCNNNNNNNGG	2 cut(s)	274, 331
AgsI	TTSAA	2 cut(s)	12, 706
AluBI	AGCT	5 cut(s)	626, 695, 777, 1091, 1104
AluI	AGCT	5 cut(s)	626, 695, 777, 1091, 1104
Alw26I	GTCTC	5 cut(s)	16, 413, 571, 994, 1026
AlwI	GGATC	3 cut(s)	35, 404, 1116
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	2 cut(s)	3, 647
ApeKI	GCWGC	6 cut(s)	623, 626, 728, 943, 1027, 1082
ApoI	RAATTY	1 cut(s)	701
Asp700I	GAANNNNTTC	3 cut(s)	131, 432, 1047
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	4, 866
AsuHPI	GGTGA	2 cut(s)	851, 1174
AvaII	GGWCC	1 cut(s)	866
BbvI	GCAGC	6 cut(s)	613, 635, 715, 930, 1039, 1069
BccI	CCATC	2 cut(s)	783, 1189
BceAI	ACGGC	3 cut(s)	46, 52, 548
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	5 cut(s)	16, 413, 571, 994, 1026
BfaI	CTAG	4 cut(s)	525, 593, 692, 696
BfmI	CTRYAG	3 cut(s)	772, 781, 1025
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	2 cut(s)	610, 984
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	6 cut(s)	624, 627, 729, 944, 1028, 1083
BlsI	GCNGC	6 cut(s)	625, 628, 730, 945, 1029, 1084
Bme18I	GGWCC	1 cut(s)	866
BmgT120I	GGNCC	2 cut(s)	4, 866
BmiI	GGNNCC	2 cut(s)	234, 859
BmsI	GCATC	1 cut(s)	1234
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BsaBI	GATNNNNATC	1 cut(s)	793
BsaHI	GRCGYC	2 cut(s)	25, 114
BsaI	GGTCTC	2 cut(s)	413, 994
BsaJI	CCNNGG	3 cut(s)	84, 606, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 331
Bse118I	RCCGGY	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	923
Bse8I	GATNNNNATC	1 cut(s)	793
BseDI	CCNNGG	3 cut(s)	84, 606, 640
BseGI	GGATG	1 cut(s)	188
BseJI	GATNNNNATC	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	274, 331
BseMI	GCAATG	1 cut(s)	923
BseMII	CTCAG	2 cut(s)	302, 313
BseXI	GCAGC	6 cut(s)	613, 635, 715, 930, 1039, 1069
BseYI	CCCAGC	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	5, 649
BsiEI	CGRYCG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	274, 331
BsmAI	GTCTC	5 cut(s)	16, 413, 571, 994, 1026
BsmBI	CGTCTC	2 cut(s)	16, 571
BsnI	GGCC	2 cut(s)	5, 649
Bso31I	GGTCTC	2 cut(s)	413, 994
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	40, 396, 816, 1121
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	3 cut(s)	149, 510, 869
BspANI	GGCC	2 cut(s)	5, 649
BspCNI	CTCAG	2 cut(s)	301, 312
BspLI	GGNNCC	2 cut(s)	234, 859
BspMAI	CTGCAG	1 cut(s)	1029
BspMI	ACCTGC	2 cut(s)	610, 984
BspPI	GGATC	3 cut(s)	35, 404, 1116
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	413, 994
BsrBI	CCGCTC	2 cut(s)	151, 871
BsrDI	GCAATG	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	84, 606, 640
BssMI	GATC	4 cut(s)	40, 396, 816, 1121
BssNAI	GTATAC	1 cut(s)	483
BssNI	GRCGYC	2 cut(s)	25, 114
BssT1I	CCWWGG	3 cut(s)	84, 606, 640
Bst1107I	GTATAC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	36, 284, 756
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	25, 114
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	3 cut(s)	170, 288, 299
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	43, 399, 819, 1124
BstMAI	GTCTC	5 cut(s)	16, 413, 571, 994, 1026
BstMBI	GATC	4 cut(s)	40, 396, 816, 1121
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	5 cut(s)	507, 719, 728, 783, 1088
BstSFI	CTRYAG	3 cut(s)	772, 781, 1025
BstV1I	GCAGC	6 cut(s)	613, 635, 715, 930, 1039, 1069
BstX2I	RGATCY	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	5, 649
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	752
BveI	ACCTGC	2 cut(s)	610, 984
Cac8I	GCNNGC	1 cut(s)	647
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	4, 866
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	5 cut(s)	313, 460, 528, 559, 917
CspCI	CAANNNNNGTGG	4 cut(s)	91, 126, 721, 756
CviAII	CATG	6 cut(s)	178, 326, 493, 607, 1139, 1246
CviQI	GTAC	5 cut(s)	313, 460, 528, 559, 917
DdeI	CTNAG	3 cut(s)	170, 288, 299
DpnI	GATC	4 cut(s)	42, 398, 818, 1123
DpnII	GATC	4 cut(s)	40, 396, 816, 1121
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	3 cut(s)	84, 606, 640
Eco31I	GGTCTC	2 cut(s)	413, 994
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	2 cut(s)	118, 1071
EcoT14I	CCWWGG	3 cut(s)	84, 606, 640
ErhI	CCWWGG	3 cut(s)	84, 606, 640
Esp3I	CGTCTC	2 cut(s)	16, 571
FaeI	CATG	6 cut(s)	181, 329, 496, 610, 1142, 1249
FatI	CATG	6 cut(s)	177, 325, 492, 606, 1138, 1245
FblI	GTMKAC	3 cut(s)	90, 340, 482
Fnu4HI	GCNGC	6 cut(s)	624, 627, 729, 944, 1028, 1083
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	624, 627, 729, 944, 1028, 1083
FspBI	CTAG	4 cut(s)	525, 593, 692, 696
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	6 cut(s)	624, 627, 729, 944, 1028, 1083
GsaI	CCCAGC	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	5, 649
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	25, 114
Hin1II	CATG	6 cut(s)	181, 329, 496, 610, 1142, 1249
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	3 cut(s)	91, 341, 769
HindII	GTYRAC	3 cut(s)	91, 341, 769
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	851, 1174
Hpy166II	GTNNAC	4 cut(s)	91, 341, 483, 769
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	5 cut(s)	203, 394, 453, 593, 1109
Hpy8I	GTNNAC	4 cut(s)	91, 341, 483, 769
Hpy99I	CGWCG	3 cut(s)	61, 67, 119
HpyAV	CCTTC	4 cut(s)	54, 121, 257, 857
HpyCH4III	ACNGT	3 cut(s)	36, 284, 756
HpyCH4IV	ACGT	2 cut(s)	25, 469
HpyCH4V	TGCA	7 cut(s)	241, 296, 623, 752, 830, 923, 1027
HpyF10VI	GCNNNNNNNGC	5 cut(s)	507, 719, 728, 783, 1088
HpyF3I	CTNAG	3 cut(s)	170, 288, 299
HpySE526I	ACGT	2 cut(s)	25, 469
Hsp92I	GRCGYC	2 cut(s)	25, 114
Hsp92II	CATG	6 cut(s)	181, 329, 496, 610, 1142, 1249
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	40, 396, 816, 1121
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	6 cut(s)	613, 635, 715, 930, 1039, 1069
LweI	GCATC	1 cut(s)	1234
MaeI	CTAG	4 cut(s)	525, 593, 692, 696
MaeII	ACGT	2 cut(s)	25, 469
MalI	GATC	4 cut(s)	42, 398, 818, 1123
MbiI	CCGCTC	2 cut(s)	151, 871
MboI	GATC	4 cut(s)	40, 396, 816, 1121
MboII	GAAGA	4 cut(s)	42, 145, 581, 1052
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	4 cut(s)	701, 898, 1071, 1144
MmeI	TCCRAC	1 cut(s)	216
MroXI	GAANNNNTTC	3 cut(s)	131, 432, 1047
MseI	TTAA	5 cut(s)	222, 503, 806, 894, 903
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	3 cut(s)	510, 626, 1091
MspI	CCGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	5 cut(s)	507, 719, 728, 783, 1088
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	40, 396, 816, 1121
NlaIII	CATG	6 cut(s)	181, 329, 496, 610, 1142, 1249
NlaIV	GGNNCC	2 cut(s)	234, 859
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PdmI	GAANNNNTTC	3 cut(s)	131, 432, 1047
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	625, 628, 730, 945, 1029, 1084
PspFI	CCCAGC	1 cut(s)	722
PspN4I	GGNNCC	2 cut(s)	234, 859
PspPI	GGNCC	2 cut(s)	4, 866
PstI	CTGCAG	1 cut(s)	1029
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	396
PvuII	CAGCTG	2 cut(s)	626, 1091
RsaI	GTAC	5 cut(s)	314, 461, 529, 560, 918
RsaNI	GTAC	5 cut(s)	313, 460, 528, 559, 917
RseI	CAYNNNNRTG	1 cut(s)	852
SalI	GTCGAC	2 cut(s)	89, 339
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	222, 503, 806, 894, 903
SatI	GCNGC	6 cut(s)	624, 627, 729, 944, 1028, 1083
Sau3AI	GATC	4 cut(s)	40, 396, 816, 1121
Sau96I	GGNCC	2 cut(s)	4, 866
SfaNI	GCATC	1 cut(s)	1234
SfcI	CTRYAG	3 cut(s)	772, 781, 1025
SinI	GGWCC	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	852
Sse9I	AATT	4 cut(s)	701, 898, 1071, 1144
SsiI	CCGC	3 cut(s)	149, 510, 869
SspMI	CTAG	4 cut(s)	525, 593, 692, 696
StyI	CCWWGG	3 cut(s)	84, 606, 640
TaaI	ACNGT	3 cut(s)	36, 284, 756
TaiI	ACGT	2 cut(s)	28, 472
TaqI	TCGA	3 cut(s)	90, 340, 1120
TasI	AATT	4 cut(s)	701, 898, 1071, 1144
TatI	WGTACW	3 cut(s)	312, 527, 916
Tru1I	TTAA	5 cut(s)	222, 503, 806, 894, 903
Tru9I	TTAA	5 cut(s)	222, 503, 806, 894, 903
TscAI	CASTG	1 cut(s)	759
TseI	GCWGC	6 cut(s)	623, 626, 728, 943, 1027, 1082
TspDTI	ATGAA	4 cut(s)	36, 42, 564, 1234
TspGWI	ACGGA	2 cut(s)	477, 898
TspRI	CASTG	1 cut(s)	759
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	1 cut(s)	701
XbaI	TCTAGA	1 cut(s)	592
XmiI	GTMKAC	3 cut(s)	90, 340, 482
XmnI	GAANNNNTTC	3 cut(s)	131, 432, 1047
XspI	CTAG	4 cut(s)	525, 593, 692, 696
ZraI	GACGTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.