Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0029246

Physical Location & Seq

Genomic Coordinates Reverse (-)

19976012 .. 19977837

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAGGAGGATTTCGAGTTCTTCATTTGGTCAGACCGTTTCTGTCATTTTTGCCCGAAGTTCAGAGCGCTGACCGGAAAGTACCCTTTAGAGAGAAGGTGATATACACTGTTATCTCGCTGTTCATTTTCTTGGTGTGCAGCCAGCTCCCTCTCTATGGCATACACTCCACCACGGGGGCAGATCCCTTCTATTGGATGCGTGTTATCCTCGCTTCCAACCGTGGGACTGTCATGGAGCTTGGGATCACCCCAATTGTCACATCTGGGCTGGTGATGCAACTCCTTGCTGGGTCTAAGATTATTGAGGTTGACAACAATGTACGAGACGATCGTGCTCTTTTAAATGGAGCACAGAAGTTATTGGGTATCCTGATAGCTATTGGAGAGGCAGTTGCGTATGTCCTCTCCGGCATGTATGGTAGTGTTGGCCAACTTGGAGTTGGAAATGCCATTCTAATTATAATTCAGCTCTGCTTTGCCGGTATCATTGTGATATGTTTGGATGAACTTCTTCAGAAGGGATATGGTCTAGGCTCTGGAATTTCACTTTTCATTGCCACCAATATCTGTGAAAACATTATCTGGAAGGCATTTAGTCCCACCACTATCAACAGTGGGAGGGGAGCTGAATTTGAAGGTGCTGTTATTGCCCTGTTCCATCTTCTGATAACTCGGACAGATAAGGTTCGAGCTCTCCGGGAGGCCTTCTACAGGCAGAATCTTCCCAACGTGACAAATCTGCTTGCCACGGTGTTGATCTTCCTTATAGTAATTTATTTCCAAGGGTTCCGTGTGGTTCTGCCAGTGATCGATCAAAGAATGCTCGTGGACAGCAGGGTTCTTATCCTATCAAGCTGTTCTACACTTCCAACATGCCCATCATTTTGCAGTCTGCACTTGTGTCCAACCTTTACTTTATCTCTCAGTTGCTTTACAGGAGGTACAGCGGAAATTTCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

322

Amino Acids

34.97

Weight (kDa)

8.37

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029246)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g19370 pycom10g22940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AciI	CCGC	1 cut(s)	950
AclWI	GGATC	2 cut(s)	179, 254
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	3 cut(s)	543, 632, 954
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	84, 324, 946
AfeI	AGCGCT	1 cut(s)	70
AfiI	CCNNNNNNNGG	5 cut(s)	158, 177, 195, 225, 714
AgsI	TTSAA	1 cut(s)	638
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	7 cut(s)	148, 241, 380, 472, 629, 695, 858
AluI	AGCT	7 cut(s)	148, 241, 380, 472, 629, 695, 858
Alw21I	GWGCWC	3 cut(s)	340, 355, 697
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	179, 254
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	2 cut(s)	430, 705
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	543, 632, 954
Asp700I	GAANNNNTTC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	112, 241, 286
BalI	TGGCCA	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	697
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BauI	CACGAG	1 cut(s)	827
Bbv12I	GWGCWC	3 cut(s)	340, 355, 697
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	669, 889
BciVI	GTATCC	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	712
BfoI	RGCGCY	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	189, 267
BpuMI	CCSGG	1 cut(s)	701
Bsa29I	ATCGAT	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	174, 223, 750, 784
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	5 cut(s)	158, 177, 195, 225, 714
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	806
Bse3DI	GCAATG	1 cut(s)	555
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	174, 223, 750, 784
BseGI	GGATG	2 cut(s)	204, 511
BseLI	CCNNNNNNNGG	5 cut(s)	158, 177, 195, 225, 714
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	940
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	160, 881
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	432, 707
BshVI	ATCGAT	1 cut(s)	813
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	3 cut(s)	340, 355, 697
BsiSI	CCGG	4 cut(s)	76, 411, 483, 700
BslFI	GGGAC	2 cut(s)	241, 585
BslI	CCNNNNNNNGG	5 cut(s)	158, 177, 195, 225, 714
BsmAI	GTCTC	1 cut(s)	321
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	241, 585
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	2 cut(s)	432, 707
Bsp1286I	GDGCHC	3 cut(s)	340, 355, 697
Bsp143I	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
BspACI	CCGC	1 cut(s)	950
BspANI	GGCC	2 cut(s)	432, 707
BspCNI	CTCAG	1 cut(s)	939
BspDI	ATCGAT	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	791
BspPI	GGATC	2 cut(s)	179, 254
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	4 cut(s)	174, 223, 750, 784
BssMI	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
BssSI	CACGAG	1 cut(s)	827
BssT1I	CCWWGG	1 cut(s)	784
Bst2BI	CACGAG	1 cut(s)	827
Bst4CI	ACNGT	6 cut(s)	39, 112, 224, 232, 617, 754
BstC8I	GCNNGC	2 cut(s)	146, 747
BstDEI	CTNAG	2 cut(s)	297, 926
BstDSI	CCRYGG	3 cut(s)	174, 223, 750
BstENI	CCTNNNNNAGG	1 cut(s)	712
BstF5I	GGATG	2 cut(s)	204, 511
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	6 cut(s)	187, 249, 334, 762, 813, 817
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 650
BstNSI	RCATGY	2 cut(s)	418, 879
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	712
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	432, 707
BsuTUI	ATCGAT	1 cut(s)	813
BtgI	CCRYGG	3 cut(s)	174, 223, 750
BtsCI	GGATG	2 cut(s)	204, 511
BtsIMutI	CAGTG	3 cut(s)	108, 622, 813
Cac8I	GCNNGC	2 cut(s)	146, 747
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	3 cut(s)	83, 323, 945
CviAII	CATG	3 cut(s)	235, 415, 876
CviQI	GTAC	3 cut(s)	83, 323, 945
DdeI	CTNAG	2 cut(s)	297, 926
DpnI	GATC	6 cut(s)	186, 248, 333, 761, 812, 816
DpnII	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
DraI	TTTAAA	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	784
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	697
Eco47III	AGCGCT	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	695
EcoNI	CCTNNNNNAGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	3 cut(s)	238, 418, 879
FaqI	GGGAC	2 cut(s)	241, 585
FatI	CATG	3 cut(s)	234, 414, 875
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	2 cut(s)	211, 518
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	432, 707
HapII	CCGG	4 cut(s)	76, 411, 483, 700
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	238, 418, 879
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	721
HpaII	CCGG	4 cut(s)	76, 411, 483, 700
HphI	GGTGA	3 cut(s)	112, 241, 286
Hpy166II	GTNNAC	2 cut(s)	313, 832
Hpy188I	TCNGA	5 cut(s)	35, 66, 519, 669, 678
Hpy188III	TCNNGA	3 cut(s)	373, 540, 586
Hpy8I	GTNNAC	2 cut(s)	313, 832
HpyAV	CCTTC	6 cut(s)	91, 199, 514, 583, 632, 718
HpyCH4III	ACNGT	6 cut(s)	39, 112, 224, 232, 617, 754
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	4 cut(s)	141, 280, 891, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 650
HpyF3I	CTNAG	2 cut(s)	297, 926
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	3 cut(s)	238, 418, 879
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
LmnI	GCTCC	4 cut(s)	153, 238, 350, 626
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	189, 267
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	2 cut(s)	259, 733
MalI	GATC	6 cut(s)	186, 248, 333, 761, 812, 816
MboI	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
MboII	GAAGA	5 cut(s)	14, 506, 656, 716, 754
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	340, 355, 697
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	7 cut(s)	255, 459, 465, 543, 632, 774, 954
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	4 cut(s)	243, 424, 896, 932
MnlI	CCTC	8 cut(s)	162, 221, 301, 382, 416, 615, 697, 935
Mox20I	TGGCCA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	4 cut(s)	76, 411, 483, 700
MspR9I	CCNGG	1 cut(s)	701
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	828
MwoI	GCNNNNNNNGC	2 cut(s)	277, 650
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
NlaIII	CATG	3 cut(s)	238, 418, 879
NlaIV	GGNNCC	1 cut(s)	791
NmuCI	GTSAC	2 cut(s)	259, 733
NspI	RCATGY	2 cut(s)	418, 879
PceI	AGGCCT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	721
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	1 cut(s)	143
Ple19I	CGATCG	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	84, 324, 946
RsaNI	GTAC	3 cut(s)	83, 323, 945
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	6 cut(s)	184, 246, 331, 759, 810, 814
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	3 cut(s)	340, 355, 697
SfaNI	GCATC	2 cut(s)	189, 267
SfcI	CTRYAG	1 cut(s)	712
Sse9I	AATT	7 cut(s)	255, 459, 465, 543, 632, 774, 954
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	1 cut(s)	950
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	6 cut(s)	39, 112, 224, 232, 617, 754
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	3 cut(s)	16, 691, 813
TasI	AATT	7 cut(s)	255, 459, 465, 543, 632, 774, 954
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	3 cut(s)	115, 622, 813
TseFI	GTSAC	2 cut(s)	259, 733
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	259, 733
TspDTI	ATGAA	4 cut(s)	14, 115, 522, 544
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	3 cut(s)	115, 622, 813
XagI	CCTNNNNNAGG	1 cut(s)	712
XapI	RAATTY	3 cut(s)	543, 632, 954
XceI	RCATGY	2 cut(s)	418, 879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.