Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024627

Physical Location & Seq

Genomic Coordinates Forward (+)

22671376 .. 22673095

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGCCCCTGATCTCTGGGAAACTGCTGGCAATGTTGCCGTTAATGTTGGAGTCGTGTCTTATTGTTCTTGTGGCATTATTTTTATGGGAAAACAAGAAGGAGGAGGAACAACTTTCACAAATATCTCGCGATGAAAATCTATCGAGATTGCCATTGCGCCTCTCCACCAACCGGGTTGTTGAGCTTGTGCAGTTGCGTGACACTGTTAGGCCTGTTATTTTAGCAGGGAAGAAGGAGACTGTTGCCTTAAGTATCCAGCAGGCAGCAAGATTTCGAACCGAGCTCCTAAGAAGAGGTGTTCTTTTAGTTCCTGTCATCTGGGATGAAGTTAAGGTACCTCAAATAGAGAAGAAAGGCTTCGGTACACCTTCAAAGGCAGCTGCTGCTCTTCCTTCTATTGGAGAAGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAGTTAAAAGCTGAAATCCGATTCAAGGCTGAGGCTGTATCCCCTGCAGAATGGGAAAGGTGGATAAAGGATCAGCAAAAGTCCGAAGGAGTTACTCCTGGTGAGGATGTCTACATTATACTGCGCCTGGATGGTCGGGTTCGAACGATCAGGGAAAGGCATGCCGGACTGGCAAGAAATTGTGCAGGAGCTGCCACCAATAGAAGCATTACTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

9.82

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024627)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22580
rosa_multiflora	Rmu_co8326209.1_g000001
rosa_samantha	Rh6BG356200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	132
AclWI	GGATC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	339, 367
AfiI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	375, 472
AjnI	CCWGG	2 cut(s)	544, 573
AluBI	AGCT	5 cut(s)	187, 286, 383, 458, 638
AluI	AGCT	5 cut(s)	187, 286, 383, 458, 638
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	525
AlwNI	CAGNNNCTG	2 cut(s)	386, 638
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	5 cut(s)	266, 380, 383, 386, 638
Asp700I	GAANNNNTTC	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	162, 573
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	2 cut(s)	277, 589
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	546, 575
BciVI	GTATCC	2 cut(s)	266, 496
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	250
BfuI	GTATCC	2 cut(s)	266, 496
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
BlsI	GCNGC	5 cut(s)	268, 382, 385, 388, 640
Bme1390I	CCNGG	3 cut(s)	176, 546, 575
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	176, 546, 575
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	2 cut(s)	277, 589
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 401, 472
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	39, 155
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	546, 575
BseGI	GGATG	3 cut(s)	331, 559, 583
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
BseMI	GCAATG	2 cut(s)	39, 155
BseMII	CTCAG	2 cut(s)	440, 468
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BsgI	GTGCAG	2 cut(s)	212, 651
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	175, 612
BslI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	214
Bsp119I	TTCGAA	2 cut(s)	277, 589
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	12, 517, 594
Bsp68I	TCGCGA	1 cut(s)	132
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	439, 469
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	525
BspQI	GCTCTTC	1 cut(s)	396
BspT104I	TTCGAA	2 cut(s)	277, 589
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	39, 155
BsrI	ACTGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	12, 517, 594
Bst2UI	CCWGG	2 cut(s)	546, 575
Bst4CI	ACNGT	2 cut(s)	208, 244
Bst6I	CTCTTC	2 cut(s)	289, 396
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	2 cut(s)	386, 638
BstBI	TTCGAA	2 cut(s)	277, 589
BstC8I	GCNNGC	3 cut(s)	30, 264, 609
BstDEI	CTNAG	4 cut(s)	290, 426, 477, 660
BstF5I	GGATG	3 cut(s)	331, 559, 583
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	162, 573
BstKTI	GATC	3 cut(s)	15, 520, 597
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	12, 517, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
BstNI	CCWGG	2 cut(s)	546, 575
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	174, 544, 573
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BsuI	GTATCC	2 cut(s)	266, 496
BsuRI	GGCC	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	331, 559, 583
BtsIMutI	CAGTG	1 cut(s)	204
BtuMI	TCGCGA	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	30, 264, 609
CaiI	CAGNNNCTG	2 cut(s)	386, 638
CfoI	GCGC	2 cut(s)	162, 573
Csp6I	GTAC	2 cut(s)	338, 366
CviAII	CATG	1 cut(s)	608
CviJI	RGCY	9 cut(s)	187, 214, 286, 360, 383, 458, 476, 482, 638
CviKI_1	RGCY	9 cut(s)	187, 214, 286, 360, 383, 458, 476, 482, 638
CviQI	GTAC	2 cut(s)	338, 366
DdeI	CTNAG	4 cut(s)	290, 426, 477, 660
DpnI	GATC	3 cut(s)	14, 519, 596
DpnII	GATC	3 cut(s)	12, 517, 594
Eam1104I	CTCTTC	2 cut(s)	289, 396
EarI	CTCTTC	2 cut(s)	289, 396
Ecl136II	GAGCTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	544, 573
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	611
FaiI	YATR	4 cut(s)	88, 434, 566, 609
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
FokI	GGATG	3 cut(s)	338, 566, 590
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
GlaI	GCGC	2 cut(s)	161, 572
GluI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	175, 612
HhaI	GCGC	2 cut(s)	162, 573
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	2 cut(s)	160, 571
HinP1I	GCGC	2 cut(s)	160, 571
HinfI	GANTC	2 cut(s)	53, 468
HpaII	CCGG	2 cut(s)	175, 612
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	368, 559
Hpy188I	TCNGA	2 cut(s)	467, 532
Hpy188III	TCNNGA	3 cut(s)	131, 147, 415
Hpy8I	GTNNAC	2 cut(s)	368, 559
HpyAV	CCTTC	5 cut(s)	94, 229, 381, 405, 527
HpyCH4III	ACNGT	2 cut(s)	208, 244
HpyCH4V	TGCA	4 cut(s)	193, 440, 494, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
HpyF3I	CTNAG	4 cut(s)	290, 426, 477, 660
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	2 cut(s)	160, 571
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	12, 517, 594
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	291, 635
Lsp1109I	GCAGC	5 cut(s)	278, 370, 373, 392, 625
MaeIII	GTNAC	2 cut(s)	200, 538
MalI	GATC	3 cut(s)	14, 519, 596
MboI	GATC	3 cut(s)	12, 517, 594
MboII	GAAGA	5 cut(s)	244, 306, 364, 383, 419
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	625
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	97, 100, 173, 290, 351, 472, 544
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	44, 251, 333, 452
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	175, 612
MspR9I	CCNGG	3 cut(s)	176, 546, 575
MvaI	CCWGG	2 cut(s)	546, 575
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	12, 517, 594
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	200
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	2 cut(s)	277, 589
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	268, 382, 385, 388, 640
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	544, 573
PspGI	CCWGG	2 cut(s)	544, 573
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	2 cut(s)	386, 638
PvuII	CAGCTG	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	2 cut(s)	339, 367
RsaNI	GTAC	2 cut(s)	338, 366
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	44, 251, 333, 452
SatI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
Sau3AI	GATC	3 cut(s)	12, 517, 594
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	176, 546, 575
SduI	GDGCHC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	2 cut(s)	277, 589
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	1 cut(s)	625
SseBI	AGGCCT	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	174, 544, 573
TaaI	ACNGT	2 cut(s)	208, 244
TaqI	TCGA	4 cut(s)	146, 277, 414, 589
TasI	AATT	1 cut(s)	625
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	4 cut(s)	44, 251, 333, 452
Tru9I	TTAA	4 cut(s)	44, 251, 333, 452
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	5 cut(s)	266, 380, 383, 386, 638
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	150, 342
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.