Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0024627

Physical Location & Seq

Genomic Coordinates Forward (+)

58657062 .. 58657860

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAGCAGGCAGCGAGGTTCCGAACGGATCTCCTCTCAAGAGGTGTTCTTTTAGTTCCTGTTATCTGGGGTGAAGTTAGGACACCTCAAACAGAGAAGAAAGGCTTTGGCACACCTTCAAAGGCAGCCGCCGCTCTGCCTTCTATTGGGGAAGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAATTAAAAGCTGAAATTCGATTCAAGGCCGAGATTGTATCCCCTGAGGAATGGGAAAGTTGGATAAGGGATCAGCAGAAGTCTGAAGGAGTCACTCCTGGTGAGGATGTCTACATTATACTGCGCCTAGATGGTCGGGTTCGAAGATCAGGGAAAGGCATGCCTGACTGGCAACAAATTTTGCAGGAGCTGCCTCCAGTAGAAGCATTGCTTAGCAAACTTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

140

Amino Acids

15.83

Weight (kDa)

9.3

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024627)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22580
rosa_multiflora	Rmu_co8326209.1_g000001
rosa_samantha	Rh6BG356200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	129, 132
AclWI	GGATC	2 cut(s)	36, 270
AcsI	RAATTY	2 cut(s)	207, 369
AcuI	CTGAAG	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	120, 217, 416
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	203, 382
AluI	AGCT	2 cut(s)	203, 382
AlwI	GGATC	2 cut(s)	36, 270
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	4, 11, 125, 382
ApoI	RAATTY	2 cut(s)	207, 369
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	83, 305
AsuII	TTCGAA	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	16, 23, 137, 369
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	6 cut(s)	5, 12, 126, 129, 132, 383
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	6 cut(s)	6, 13, 127, 130, 133, 384
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	365, 389
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	185, 228
BseNI	ACTGG	2 cut(s)	365, 389
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	16, 23, 137, 369
BshFI	GGCC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	28, 262, 338
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	2 cut(s)	129, 132
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	184, 229
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	36, 270
BspT104I	TTCGAA	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	365, 389
BssMI	GATC	3 cut(s)	28, 262, 338
Bst2UI	CCWGG	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	9, 353
BstDEI	CTNAG	3 cut(s)	171, 237, 404
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	31, 265, 341
BstMBI	GATC	3 cut(s)	28, 262, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 361, 382
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	4 cut(s)	16, 23, 137, 369
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	9, 353
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	318
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	5 cut(s)	105, 128, 203, 221, 382
CviKI_1	RGCY	5 cut(s)	105, 128, 203, 221, 382
DdeI	CTNAG	3 cut(s)	171, 237, 404
DpnI	GATC	3 cut(s)	30, 264, 340
DpnII	GATC	3 cut(s)	28, 262, 338
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	355
FaiI	YATR	3 cut(s)	179, 311, 353
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 387, 419
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	6 cut(s)	5, 12, 126, 129, 132, 383
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	5, 12, 126, 129, 132, 383
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	6 cut(s)	5, 12, 126, 129, 132, 383
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	213, 282
HphI	GGTGA	2 cut(s)	83, 305
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	23, 277
Hpy188III	TCNNGA	2 cut(s)	39, 160
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	126, 150, 272
HpyCH4V	TGCA	3 cut(s)	4, 185, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 361, 382
HpyF3I	CTNAG	3 cut(s)	171, 237, 404
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	28, 262, 338
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	16, 23, 137, 369
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	30, 264, 340
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	3 cut(s)	28, 262, 338
MboII	GAAGA	3 cut(s)	109, 164, 348
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	194, 207, 369
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	9, 35, 44, 96, 232, 289, 396
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	131, 361, 382
NdeII	GATC	3 cut(s)	28, 262, 338
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	20
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	334
PaeI	GCATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	6 cut(s)	6, 13, 127, 130, 133, 384
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	6 cut(s)	5, 12, 126, 129, 132, 383
Sau3AI	GATC	3 cut(s)	28, 262, 338
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	20, 46, 88, 118, 205, 384
SfuI	TTCGAA	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	3 cut(s)	194, 207, 369
SsiI	CCGC	2 cut(s)	129, 132
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	289
TaqI	TCGA	3 cut(s)	159, 211, 334
TasI	AATT	3 cut(s)	194, 207, 369
TauI	GCSGC	2 cut(s)	131, 134
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	4, 11, 125, 382
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	41
XapI	RAATTY	2 cut(s)	207, 369
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.