Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024627

Physical Location & Seq

Genomic Coordinates Forward (+)

22671376 .. 22673095

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGCCCCTGATCTCTGGGAAACTGCTGGCAATGTTGCCGTTAATGTTGGAGTCGTGTCTTATTGTTCTTGTGGCATTATTTTTATGGGAAAACAAGAAGGAGGAGGAACAACTTTCACAAATATCTCGCGATGAAAATCTATCGAGATTGCCATTGCGCCTCTCCACCAACCGGGTTGTTGAGCTTGTGCAGTTGCGTGACACTGTTAGGCCTGTTATTTTAGCAGGGAAGAAGGAGACTGTTGCCTTAAGTATCCAGCAGGCAGCAAGATTTCGAACCGAGCTCCTAAGAAGAGGTGTTCTTTTAGTTCCTGTCATCTGGGATGAAGTTAAGGTACCTCAAATAGAGAAGAAAGGCTTCGGTACACCTTCAAAGGCAGCTGCTGCTCTTCCTTCTATTGGAGAAGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAGTTAAAAGCTGAAATCCGATTCAAGGCTGAGGCTGTATCCCCTGCAGAATGGGAAAGGTGGATAAAGGATCAGCAAAAGTCCGAAGGAGTTACTCCTGGTGAGGATGTCTACATTATACTGCGCCTGGATGGTCGGGTTCGAACGATCAGGGAAAGGCATGCCGGACTGGCAAGAAATTGTGCAGGAGCTGCCACCAATAGAAGCATTACTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

9.82

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024627)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22580
rosa_multiflora	Rmu_co8326209.1_g000001
rosa_samantha	Rh6BG356200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	132
AclWI	GGATC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	339, 367
AfiI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	375, 472
AjnI	CCWGG	2 cut(s)	544, 573
AluBI	AGCT	5 cut(s)	187, 286, 383, 458, 638
AluI	AGCT	5 cut(s)	187, 286, 383, 458, 638
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	525
AlwNI	CAGNNNCTG	2 cut(s)	386, 638
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	5 cut(s)	266, 380, 383, 386, 638
Asp700I	GAANNNNTTC	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	162, 573
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	2 cut(s)	277, 589
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	546, 575
BciVI	GTATCC	2 cut(s)	266, 496
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	250
BfuI	GTATCC	2 cut(s)	266, 496
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
BlsI	GCNGC	5 cut(s)	268, 382, 385, 388, 640
Bme1390I	CCNGG	3 cut(s)	176, 546, 575
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	176, 546, 575
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	2 cut(s)	277, 589
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 401, 472
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	39, 155
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	546, 575
BseGI	GGATG	3 cut(s)	331, 559, 583
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
BseMI	GCAATG	2 cut(s)	39, 155
BseMII	CTCAG	2 cut(s)	440, 468
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BsgI	GTGCAG	2 cut(s)	212, 651
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	175, 612
BslI	CCNNNNNNNGG	3 cut(s)	174, 401, 472
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	214
Bsp119I	TTCGAA	2 cut(s)	277, 589
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	12, 517, 594
Bsp68I	TCGCGA	1 cut(s)	132
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	439, 469
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	525
BspQI	GCTCTTC	1 cut(s)	396
BspT104I	TTCGAA	2 cut(s)	277, 589
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	39, 155
BsrI	ACTGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	12, 517, 594
Bst2UI	CCWGG	2 cut(s)	546, 575
Bst4CI	ACNGT	2 cut(s)	208, 244
Bst6I	CTCTTC	2 cut(s)	289, 396
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	2 cut(s)	386, 638
BstBI	TTCGAA	2 cut(s)	277, 589
BstC8I	GCNNGC	3 cut(s)	30, 264, 609
BstDEI	CTNAG	4 cut(s)	290, 426, 477, 660
BstF5I	GGATG	3 cut(s)	331, 559, 583
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	162, 573
BstKTI	GATC	3 cut(s)	15, 520, 597
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	12, 517, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
BstNI	CCWGG	2 cut(s)	546, 575
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	174, 544, 573
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	5 cut(s)	278, 370, 373, 392, 625
BsuI	GTATCC	2 cut(s)	266, 496
BsuRI	GGCC	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	331, 559, 583
BtsIMutI	CAGTG	1 cut(s)	204
BtuMI	TCGCGA	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	30, 264, 609
CaiI	CAGNNNCTG	2 cut(s)	386, 638
CfoI	GCGC	2 cut(s)	162, 573
Csp6I	GTAC	2 cut(s)	338, 366
CviAII	CATG	1 cut(s)	608
CviJI	RGCY	9 cut(s)	187, 214, 286, 360, 383, 458, 476, 482, 638
CviKI_1	RGCY	9 cut(s)	187, 214, 286, 360, 383, 458, 476, 482, 638
CviQI	GTAC	2 cut(s)	338, 366
DdeI	CTNAG	4 cut(s)	290, 426, 477, 660
DpnI	GATC	3 cut(s)	14, 519, 596
DpnII	GATC	3 cut(s)	12, 517, 594
Eam1104I	CTCTTC	2 cut(s)	289, 396
EarI	CTCTTC	2 cut(s)	289, 396
Ecl136II	GAGCTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	544, 573
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	611
FaiI	YATR	4 cut(s)	88, 434, 566, 609
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
FokI	GGATG	3 cut(s)	338, 566, 590
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
GlaI	GCGC	2 cut(s)	161, 572
GluI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	175, 612
HhaI	GCGC	2 cut(s)	162, 573
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	2 cut(s)	160, 571
HinP1I	GCGC	2 cut(s)	160, 571
HinfI	GANTC	2 cut(s)	53, 468
HpaII	CCGG	2 cut(s)	175, 612
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	368, 559
Hpy188I	TCNGA	2 cut(s)	467, 532
Hpy188III	TCNNGA	3 cut(s)	131, 147, 415
Hpy8I	GTNNAC	2 cut(s)	368, 559
HpyAV	CCTTC	5 cut(s)	94, 229, 381, 405, 527
HpyCH4III	ACNGT	2 cut(s)	208, 244
HpyCH4V	TGCA	4 cut(s)	193, 440, 494, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
HpyF3I	CTNAG	4 cut(s)	290, 426, 477, 660
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	2 cut(s)	160, 571
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	12, 517, 594
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	291, 635
Lsp1109I	GCAGC	5 cut(s)	278, 370, 373, 392, 625
MaeIII	GTNAC	2 cut(s)	200, 538
MalI	GATC	3 cut(s)	14, 519, 596
MboI	GATC	3 cut(s)	12, 517, 594
MboII	GAAGA	5 cut(s)	244, 306, 364, 383, 419
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	625
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	97, 100, 173, 290, 351, 472, 544
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	44, 251, 333, 452
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	175, 612
MspR9I	CCNGG	3 cut(s)	176, 546, 575
MvaI	CCWGG	2 cut(s)	546, 575
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	386, 617, 638
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	12, 517, 594
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	200
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	2 cut(s)	277, 589
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	268, 382, 385, 388, 640
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	544, 573
PspGI	CCWGG	2 cut(s)	544, 573
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	2 cut(s)	386, 638
PvuII	CAGCTG	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	2 cut(s)	339, 367
RsaNI	GTAC	2 cut(s)	338, 366
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	44, 251, 333, 452
SatI	GCNGC	5 cut(s)	267, 381, 384, 387, 639
Sau3AI	GATC	3 cut(s)	12, 517, 594
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	176, 546, 575
SduI	GDGCHC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	2 cut(s)	277, 589
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	1 cut(s)	625
SseBI	AGGCCT	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	174, 544, 573
TaaI	ACNGT	2 cut(s)	208, 244
TaqI	TCGA	4 cut(s)	146, 277, 414, 589
TasI	AATT	1 cut(s)	625
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	4 cut(s)	44, 251, 333, 452
Tru9I	TTAA	4 cut(s)	44, 251, 333, 452
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	5 cut(s)	266, 380, 383, 386, 638
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	150, 342
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.