pycom04g00850

Small ubiquitinrelated modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0028685
Physical Location & Seq
Forward (+)
750112 .. 750662
551 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00850.2

Sequence Viewer

Length: 243 bp
ATGAGATCCCCTTGCAGGATGGAAGTGAAGTGTTTTTCAGGATTAAACCAACTACAAAGCATTGATGCATTGTGCACAAAACGTTCCCTGGATCGCAATTCCTTAGTGTTCATTTTCGATGGTGATCACATTAATGGCAAGAAGACTGCTGCGGAGCATCATATGGAAGATGGTGATGAAATCGATGTCTTTCTTCTCACTGATGGAGGTTCAGTGACATTCAAGCTTGTCATGATGAACTGA

Protein Analysis

81

Amino Acids

8.98

Weight (kDa)

5.44

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028685)

Species Orthologous Gene IDs
malus_domestica MD04G1010400.v1.1
pyrus_communis pycom04g00850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclI AACGTT 1 cut(s) 82
AclWI GGATC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 77
Alw44I GTGCAC 1 cut(s) 73
AlwI GGATC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 134, 185
BaeGI GKGCMC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 136
BccI CCATC 4 cut(s) 13, 113, 164, 197
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 124
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 55, 166
BpiI GAAGAC 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 5, 91, 124
BspACI CCGC 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 183
BspHI TCATGA 1 cut(s) 231
BspPI GGATC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 5, 91, 124
Bst2UI CCWGG 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 3 cut(s) 8, 94, 127
BstMBI GATC 3 cut(s) 5, 91, 124
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 198, 219
CciI TCATGA 1 cut(s) 231
ClaI ATCGAT 1 cut(s) 183
CviAII CATG 1 cut(s) 232
CviJI RGCY 1 cut(s) 226
CviKI_1 RGCY 1 cut(s) 226
DdeI CTNAG 1 cut(s) 103
DpnI GATC 3 cut(s) 7, 93, 126
DpnII GATC 3 cut(s) 5, 91, 124
EcoRII CCWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 162, 164, 233
FatI CATG 1 cut(s) 231
FauNDI CATATG 1 cut(s) 162
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 224
HphI GGTGA 2 cut(s) 134, 185
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 39, 232
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 15, 68, 75
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 5, 91, 124
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 24, 74, 101
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 55, 166
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 7, 93, 126
MboI GATC 3 cut(s) 5, 91, 124
MboII GAAGA 3 cut(s) 154, 179, 185
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 97
MnlI CCTC 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 2 cut(s) 44, 132
MslI CAYNNNNRTG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 162
NdeII GATC 3 cut(s) 5, 91, 124
NlaIII CATG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 70
PagI TCATGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 2 cut(s) 44, 132
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 5, 91, 124
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 77
SetI ASST 3 cut(s) 85, 211, 228
SfaNI GCATC 2 cut(s) 55, 166
SgeI CNNG 8 cut(s) 24, 28, 51, 100, 101, 151, 235, 239
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 117, 183
TasI AATT 1 cut(s) 97
Tru1I TTAA 2 cut(s) 44, 132
Tru9I TTAA 2 cut(s) 44, 132
TscAI CASTG 2 cut(s) 205, 219
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 100, 192
TspRI CASTG 2 cut(s) 205, 219
VneI GTGCAC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.