Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0024628

Physical Location & Seq

Genomic Coordinates Forward (+)

775690 .. 776376

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCATATGATTTTTACCTCAGCTTCTCAACCTCCTAGTGGTGAGGATGCGCGTATGAACATAGGTTGGAATGAACCTCCTTGTAAACCAATCAAAATAACCAATCTCCTTCTCAACCTCTGCAACCAAGACAAAGCCGCCGTCAACAAGCTCATGATTTTCTGCACCGACACATCTCTCGGAAACTTTGATTACGCCGAGAAAGTCTTCCGTTTCATCAAAGATCCATGCTTGTTTGTTTACGATGTGATCGATCAAGGCGTGGGCATGGTTGAGAGTTTCAAGCAGGTGTTTGATGAAATACCCGAGAGAAACAGGCTTTGTTGGAACTTGAACGTTACGATTTCGAGGATGTCATGTGAGAGCAACGAGAAGCCCGATGAAGCTCCGGTTGTAACCACCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

4.82

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024628)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g00910 pycom15g16110 pycom15g16150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	138
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	283, 334
AluBI	AGCT	3 cut(s)	23, 151, 386
AluI	AGCT	3 cut(s)	23, 151, 386
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	252
BseGI	GGATG	2 cut(s)	52, 357
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	52
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	223, 249, 253
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	218
BssMI	GATC	3 cut(s)	223, 249, 253
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	52, 357
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	3 cut(s)	226, 252, 256
BstMBI	GATC	3 cut(s)	223, 249, 253
BstUI	CGCG	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	52, 357
BveI	ACCTGC	1 cut(s)	277
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	252
CviAII	CATG	4 cut(s)	154, 228, 268, 357
CviJI	RGCY	6 cut(s)	23, 137, 151, 319, 376, 386
CviKI_1	RGCY	6 cut(s)	23, 137, 151, 319, 376, 386
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	225, 251, 255
DpnII	GATC	3 cut(s)	223, 249, 253
Eco88I	CYCGRG	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	157, 231, 271, 360
FaiI	YATR	8 cut(s)	6, 8, 56, 62, 155, 229, 269, 358
FatI	CATG	4 cut(s)	153, 227, 267, 356
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	59, 364
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	157, 231, 271, 360
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	86, 145, 241
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	3 cut(s)	86, 145, 241
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	4, 123, 165
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	157, 231, 271, 360
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	223, 249, 253
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	3 cut(s)	272, 301, 402
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	337, 394
MalI	GATC	3 cut(s)	225, 251, 255
MboI	GATC	3 cut(s)	223, 249, 253
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	47, 305
MnlI	CCTC	6 cut(s)	28, 37, 42, 87, 128, 342
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	206
MspI	CCGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	3 cut(s)	223, 249, 253
NlaIII	CATG	4 cut(s)	157, 231, 271, 360
NmeAIII	GCCGAG	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 258, 375
PdmI	GAANNNNTTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	223
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	223, 249, 253
SfaNI	GCATC	1 cut(s)	37
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	252, 347
TauI	GCSGC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	71, 87, 205, 312, 396
TspGWI	ACGGA	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.